Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
USF1P22415 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC13.24□□□□□ -0.29
USF1P22415 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 APOA1-205ENST00000375329 927 ntTSL 2 BASIC13.24□□□□□ -0.29
USF1P22415 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 AZGP1P1-201ENST00000411909 902 ntBASIC13.24□□□□□ -0.29
USF1P22415 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.24□□□□□ -0.29
USF1P22415 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC13.24□□□□□ -0.29
USF1P22415 CROCCP4-201ENST00000457096 498 ntBASIC13.24□□□□□ -0.29
USF1P22415 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC13.24□□□□□ -0.29
USF1P22415 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.24□□□□□ -0.29
USF1P22415 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC13.24□□□□□ -0.29
USF1P22415 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.24□□□□□ -0.29
USF1P22415 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
USF1P22415 ABBA01031660.1-201ENST00000635219 756 ntBASIC13.24□□□□□ -0.29
USF1P22415 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
USF1P22415 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 REXO1L8P-201ENST00000604378 1897 ntBASIC13.24□□□□□ -0.29
USF1P22415 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC13.24□□□□□ -0.29
USF1P22415 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC13.24□□□□□ -0.29
USF1P22415 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC13.24□□□□□ -0.29
USF1P22415 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC13.24□□□□□ -0.29
USF1P22415 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
USF1P22415 AL592424.1-201ENST00000563624 1536 ntBASIC13.23□□□□□ -0.29
USF1P22415 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC13.23□□□□□ -0.29
USF1P22415 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
USF1P22415 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC13.23□□□□□ -0.29
USF1P22415 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.23□□□□□ -0.29
USF1P22415 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
USF1P22415 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
USF1P22415 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC13.23□□□□□ -0.29
USF1P22415 AC018665.1-201ENST00000622927 1362 ntBASIC13.23□□□□□ -0.29
USF1P22415 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC13.23□□□□□ -0.29
USF1P22415 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC13.23□□□□□ -0.29
USF1P22415 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.23□□□□□ -0.29
USF1P22415 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC13.23□□□□□ -0.29
USF1P22415 RPL13P2-201ENST00000440687 659 ntBASIC13.23□□□□□ -0.29
USF1P22415 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13.23□□□□□ -0.29
USF1P22415 EEF1DP4-201ENST00000446006 880 ntBASIC13.23□□□□□ -0.29
USF1P22415 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 RPL13AP25-201ENST00000484130 612 ntBASIC13.23□□□□□ -0.29
USF1P22415 AC119751.2-201ENST00000504529 210 ntBASIC13.23□□□□□ -0.29
USF1P22415 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
USF1P22415 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC13.23□□□□□ -0.29
USF1P22415 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC13.23□□□□□ -0.29
USF1P22415 SLC25A47P1-201ENST00000531577 414 ntBASIC13.23□□□□□ -0.29
USF1P22415 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC13.23□□□□□ -0.29
USF1P22415 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC13.23□□□□□ -0.29
USF1P22415 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.23□□□□□ -0.29
USF1P22415 PAUPAR-201ENST00000630360 2965 ntBASIC13.23□□□□□ -0.29
USF1P22415 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC13.23□□□□□ -0.29
USF1P22415 AL033527.4-201ENST00000641026 673 ntBASIC13.23□□□□□ -0.29
USF1P22415 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.23□□□□□ -0.29
USF1P22415 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC13.23□□□□□ -0.29
USF1P22415 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
USF1P22415 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms