Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC15.86■□□□□ 0.13
COL9A1P20849 AC000095.1-201ENST00000603208 874 ntBASIC15.86■□□□□ 0.13
COL9A1P20849 AL353729.2-201ENST00000605859 1249 ntBASIC15.86■□□□□ 0.13
COL9A1P20849 AC244157.2-201ENST00000616239 1006 ntBASIC15.86■□□□□ 0.13
COL9A1P20849 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.86■□□□□ 0.13
COL9A1P20849 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.86■□□□□ 0.13
COL9A1P20849 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL9A1P20849 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
COL9A1P20849 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.85■□□□□ 0.13
COL9A1P20849 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL9A1P20849 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL9A1P20849 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL9A1P20849 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC15.85■□□□□ 0.13
COL9A1P20849 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
COL9A1P20849 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
COL9A1P20849 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL9A1P20849 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL9A1P20849 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
COL9A1P20849 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.85■□□□□ 0.13
COL9A1P20849 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC15.85■□□□□ 0.13
COL9A1P20849 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.85■□□□□ 0.13
COL9A1P20849 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.85■□□□□ 0.13
COL9A1P20849 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL9A1P20849 CTSL-202ENST00000342020 933 ntTSL 2 BASIC15.85■□□□□ 0.13
COL9A1P20849 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL9A1P20849 TISP43-201ENST00000409793 538 ntTSL 4 BASIC15.85■□□□□ 0.13
COL9A1P20849 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC15.85■□□□□ 0.13
COL9A1P20849 AC024293.1-201ENST00000467930 498 ntBASIC15.85■□□□□ 0.13
COL9A1P20849 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.85■□□□□ 0.13
COL9A1P20849 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC15.85■□□□□ 0.13
COL9A1P20849 AC084262.1-201ENST00000567818 751 ntBASIC15.85■□□□□ 0.13
COL9A1P20849 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.85■□□□□ 0.13
COL9A1P20849 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL9A1P20849 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC15.85■□□□□ 0.13
COL9A1P20849 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
COL9A1P20849 AL161773.1-201ENST00000624845 863 ntBASIC15.85■□□□□ 0.13
COL9A1P20849 AL805961.1-203ENST00000641078 1258 ntBASIC15.85■□□□□ 0.13
COL9A1P20849 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL9A1P20849 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.85■□□□□ 0.13
COL9A1P20849 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL9A1P20849 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
COL9A1P20849 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL9A1P20849 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL9A1P20849 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC15.85■□□□□ 0.13
COL9A1P20849 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL9A1P20849 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL9A1P20849 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.85■□□□□ 0.13
COL9A1P20849 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
COL9A1P20849 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
COL9A1P20849 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL9A1P20849 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.84■□□□□ 0.13
COL9A1P20849 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.84■□□□□ 0.13
COL9A1P20849 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.84■□□□□ 0.13
COL9A1P20849 AC007787.1-201ENST00000588095 1583 ntBASIC15.84■□□□□ 0.13
COL9A1P20849 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.84■□□□□ 0.13
COL9A1P20849 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC15.84■□□□□ 0.13
COL9A1P20849 AC018463.1-201ENST00000456674 917 ntBASIC15.84■□□□□ 0.13
COL9A1P20849 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.84■□□□□ 0.13
COL9A1P20849 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC15.84■□□□□ 0.13
COL9A1P20849 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC15.84■□□□□ 0.13
COL9A1P20849 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC15.84■□□□□ 0.13
COL9A1P20849 AC092953.2-201ENST00000608000 699 ntBASIC15.84■□□□□ 0.13
COL9A1P20849 MIR6125-201ENST00000618986 96 ntBASIC15.84■□□□□ 0.13
COL9A1P20849 AC242376.2-201ENST00000619355 883 ntBASIC15.84■□□□□ 0.13
COL9A1P20849 AC051619.9-201ENST00000623237 597 ntBASIC15.84■□□□□ 0.13
COL9A1P20849 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.84■□□□□ 0.13
COL9A1P20849 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.84■□□□□ 0.13
COL9A1P20849 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.84■□□□□ 0.13
COL9A1P20849 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.84■□□□□ 0.13
COL9A1P20849 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
COL9A1P20849 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 AL354989.2-201ENST00000435838 1540 ntBASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms