Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SDC1P18827 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.82□□□□□ -0.04
SDC1P18827 AC007292.2-201ENST00000593524 1812 ntBASIC14.82□□□□□ -0.04
SDC1P18827 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.82□□□□□ -0.04
SDC1P18827 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.82□□□□□ -0.04
SDC1P18827 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 AL390755.1-201ENST00000623716 2027 ntBASIC14.82□□□□□ -0.04
SDC1P18827 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
SDC1P18827 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.82□□□□□ -0.04
SDC1P18827 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
SDC1P18827 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 HLA-J-203ENST00000494367 1087 ntBASIC14.82□□□□□ -0.04
SDC1P18827 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.82□□□□□ -0.04
SDC1P18827 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.82□□□□□ -0.04
SDC1P18827 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.82□□□□□ -0.04
SDC1P18827 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.82□□□□□ -0.04
SDC1P18827 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.82□□□□□ -0.04
SDC1P18827 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.82□□□□□ -0.04
SDC1P18827 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.82□□□□□ -0.04
SDC1P18827 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
SDC1P18827 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
SDC1P18827 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.82□□□□□ -0.04
SDC1P18827 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.82□□□□□ -0.04
SDC1P18827 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.82□□□□□ -0.04
SDC1P18827 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.82□□□□□ -0.04
SDC1P18827 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
SDC1P18827 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.82□□□□□ -0.04
SDC1P18827 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.82□□□□□ -0.04
SDC1P18827 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDC1P18827 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.81□□□□□ -0.04
SDC1P18827 AP000845.1-201ENST00000581677 2131 ntBASIC14.81□□□□□ -0.04
SDC1P18827 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
SDC1P18827 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
SDC1P18827 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.81□□□□□ -0.04
SDC1P18827 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
SDC1P18827 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.81□□□□□ -0.04
SDC1P18827 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.81□□□□□ -0.04
SDC1P18827 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.81□□□□□ -0.04
SDC1P18827 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.81□□□□□ -0.04
SDC1P18827 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.81□□□□□ -0.04
SDC1P18827 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.81□□□□□ -0.04
SDC1P18827 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.81□□□□□ -0.04
SDC1P18827 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.81□□□□□ -0.04
SDC1P18827 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.81□□□□□ -0.04
SDC1P18827 AC010336.2-201ENST00000564226 506 ntBASIC14.81□□□□□ -0.04
SDC1P18827 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.81□□□□□ -0.04
SDC1P18827 AC011467.4-201ENST00000594891 528 ntBASIC14.81□□□□□ -0.04
SDC1P18827 AL138828.2-201ENST00000615812 383 ntBASIC14.81□□□□□ -0.04
SDC1P18827 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.81□□□□□ -0.04
SDC1P18827 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.81□□□□□ -0.04
SDC1P18827 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.81□□□□□ -0.04
SDC1P18827 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.81□□□□□ -0.04
SDC1P18827 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
SDC1P18827 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
SDC1P18827 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
SDC1P18827 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.81□□□□□ -0.04
SDC1P18827 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.81□□□□□ -0.04
SDC1P18827 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.81□□□□□ -0.04
SDC1P18827 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
SDC1P18827 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms