Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM1P09493 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
TPM1P09493 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM1P09493 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM1P09493 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
TPM1P09493 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC17.22■□□□□ 0.35
TPM1P09493 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC17.22■□□□□ 0.35
TPM1P09493 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.22■□□□□ 0.35
TPM1P09493 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC17.22■□□□□ 0.35
TPM1P09493 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC17.22■□□□□ 0.35
TPM1P09493 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
TPM1P09493 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TPM1P09493 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.22■□□□□ 0.35
TPM1P09493 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.22■□□□□ 0.35
TPM1P09493 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 FAAHP1-202ENST00000446499 1238 ntBASIC17.22■□□□□ 0.35
TPM1P09493 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.22■□□□□ 0.35
TPM1P09493 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.22■□□□□ 0.35
TPM1P09493 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.22■□□□□ 0.35
TPM1P09493 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
TPM1P09493 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.22■□□□□ 0.35
TPM1P09493 RARRES2P8-201ENST00000566335 367 ntBASIC17.22■□□□□ 0.35
TPM1P09493 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
TPM1P09493 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
TPM1P09493 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC17.22■□□□□ 0.35
TPM1P09493 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.22■□□□□ 0.35
TPM1P09493 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC17.22■□□□□ 0.35
TPM1P09493 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TPM1P09493 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.22■□□□□ 0.35
TPM1P09493 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
TPM1P09493 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TPM1P09493 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TPM1P09493 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
TPM1P09493 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.21■□□□□ 0.35
TPM1P09493 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM1P09493 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM1P09493 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM1P09493 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC17.21■□□□□ 0.35
TPM1P09493 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM1P09493 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
TPM1P09493 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TPM1P09493 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM1P09493 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
TPM1P09493 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM1P09493 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
TPM1P09493 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM1P09493 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TPM1P09493 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.21■□□□□ 0.35
TPM1P09493 AL139010.1-201ENST00000454878 894 ntBASIC17.21■□□□□ 0.35
TPM1P09493 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.21■□□□□ 0.35
TPM1P09493 IGHV3-22-201ENST00000520721 359 ntBASIC17.21■□□□□ 0.35
TPM1P09493 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TPM1P09493 AL138918.1-201ENST00000568306 659 ntBASIC17.21■□□□□ 0.35
TPM1P09493 AP001005.1-201ENST00000571755 1248 ntBASIC17.21■□□□□ 0.35
TPM1P09493 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.21■□□□□ 0.35
TPM1P09493 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.21■□□□□ 0.35
TPM1P09493 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TPM1P09493 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
TPM1P09493 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TPM1P09493 ZBED1P1-201ENST00000502364 1930 ntBASIC17.21■□□□□ 0.35
TPM1P09493 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
TPM1P09493 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC17.21■□□□□ 0.35
TPM1P09493 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
TPM1P09493 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.34
TPM1P09493 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC17.21■□□□□ 0.34
TPM1P09493 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TPM1P09493 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TPM1P09493 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC17.2■□□□□ 0.34
TPM1P09493 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.2■□□□□ 0.34
TPM1P09493 UCKL1-AS1-201ENST00000623569 3602 ntBASIC17.2■□□□□ 0.34
TPM1P09493 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
TPM1P09493 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
TPM1P09493 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC17.2■□□□□ 0.34
TPM1P09493 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
TPM1P09493 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms