Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HMGB1P09429 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.33■□□□□ 0.53
HMGB1P09429 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC18.33■□□□□ 0.53
HMGB1P09429 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
HMGB1P09429 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HMGB1P09429 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
HMGB1P09429 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
HMGB1P09429 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.33■□□□□ 0.53
HMGB1P09429 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
HMGB1P09429 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 MRPS18AP1-201ENST00000414458 589 ntBASIC18.33■□□□□ 0.52
HMGB1P09429 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.33■□□□□ 0.52
HMGB1P09429 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 CYMP-203ENST00000474680 1263 ntBASIC18.33■□□□□ 0.52
HMGB1P09429 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC18.33■□□□□ 0.52
HMGB1P09429 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC18.33■□□□□ 0.52
HMGB1P09429 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC18.33■□□□□ 0.52
HMGB1P09429 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
HMGB1P09429 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 ZBED1P1-201ENST00000502364 1930 ntBASIC18.33■□□□□ 0.52
HMGB1P09429 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGB1P09429 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.33■□□□□ 0.52
HMGB1P09429 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
HMGB1P09429 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGB1P09429 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGB1P09429 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB1P09429 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
HMGB1P09429 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB1P09429 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB1P09429 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB1P09429 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB1P09429 RERG-209ENST00000546331 1383 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGB1P09429 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGB1P09429 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB1P09429 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB1P09429 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGB1P09429 SUN1-204ENST00000403868 978 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGB1P09429 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGB1P09429 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB1P09429 SPDYE18-201ENST00000510091 1050 ntBASIC18.32■□□□□ 0.52
HMGB1P09429 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGB1P09429 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.32■□□□□ 0.52
HMGB1P09429 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB1P09429 RARRES2P5-201ENST00000564013 466 ntBASIC18.32■□□□□ 0.52
HMGB1P09429 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB1P09429 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB1P09429 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGB1P09429 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGB1P09429 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB1P09429 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGB1P09429 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGB1P09429 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
HMGB1P09429 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
HMGB1P09429 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
HMGB1P09429 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
HMGB1P09429 POR-201ENST00000394893 2532 ntTSL 5 BASIC18.31■□□□□ 0.52
HMGB1P09429 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB1P09429 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
HMGB1P09429 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB1P09429 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB1P09429 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB1P09429 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB1P09429 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB1P09429 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
HMGB1P09429 MEP1AP4-201ENST00000423244 1087 ntBASIC18.31■□□□□ 0.52
HMGB1P09429 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB1P09429 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB1P09429 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB1P09429 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC18.31■□□□□ 0.52
HMGB1P09429 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB1P09429 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB1P09429 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGB1P09429 ZBTB45P1-201ENST00000452761 1456 ntBASIC18.31■□□□□ 0.52
HMGB1P09429 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGB1P09429 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB1P09429 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGB1P09429 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB1P09429 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGB1P09429 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB1P09429 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGB1P09429 TNRC18P2-201ENST00000417666 2714 ntBASIC18.3■□□□□ 0.52
HMGB1P09429 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms