Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 AC023157.3-201ENST00000619086 2088 ntBASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 MIR661-201ENST00000384842 89 ntBASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 AC236430.1-201ENST00000402231 743 ntBASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 FAM207CP-201ENST00000443486 507 ntBASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 DOC2GP-202ENST00000514950 1163 ntBASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 FLJ16779-201ENST00000612722 7638 ntBASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
ATG4BQ9Y4P1 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 CICP11-201ENST00000434745 2827 ntBASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 SPDYE19P-201ENST00000338590 713 ntBASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 RPL5P21-201ENST00000404620 815 ntBASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 AC002472.2-201ENST00000442739 958 ntBASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 GNAQP1-201ENST00000444815 1067 ntBASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 RN7SL204P-201ENST00000582831 262 ntBASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 AL391069.4-201ENST00000609583 481 ntBASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 AC091951.1-201ENST00000512854 2465 ntBASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
ATG4BQ9Y4P1 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
ATG4BQ9Y4P1 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
ATG4BQ9Y4P1 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.72□□□□□ -0.05
ATG4BQ9Y4P1 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
ATG4BQ9Y4P1 AC126365.1-201ENST00000578585 1514 ntBASIC14.72□□□□□ -0.05
ATG4BQ9Y4P1 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
ATG4BQ9Y4P1 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
ATG4BQ9Y4P1 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
ATG4BQ9Y4P1 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.72□□□□□ -0.05
ATG4BQ9Y4P1 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
ATG4BQ9Y4P1 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
ATG4BQ9Y4P1 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms