Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 IGHV3-42-201ENST00000520410 361 ntBASIC16.1■□□□□ 0.17
PCDH9Q9HC56 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 FGD5P1-202ENST00000614866 2498 ntBASIC16.1■□□□□ 0.17
PCDH9Q9HC56 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH9Q9HC56 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 AL390755.1-201ENST00000623716 2027 ntBASIC16.09■□□□□ 0.17
PCDH9Q9HC56 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 SERBP1P3-201ENST00000459980 809 ntBASIC16.09■□□□□ 0.17
PCDH9Q9HC56 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH9Q9HC56 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PCDH9Q9HC56 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
PCDH9Q9HC56 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PCDH9Q9HC56 PKD1P5-201ENST00000532415 10291 ntBASIC16.08■□□□□ 0.17
PCDH9Q9HC56 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
PCDH9Q9HC56 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PCDH9Q9HC56 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PCDH9Q9HC56 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.08■□□□□ 0.17
PCDH9Q9HC56 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PCDH9Q9HC56 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 AC055876.3-201ENST00000431496 288 ntBASIC16.08■□□□□ 0.16
PCDH9Q9HC56 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 CYMP-203ENST00000474680 1263 ntBASIC16.08■□□□□ 0.16
PCDH9Q9HC56 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 AC027796.2-201ENST00000575326 344 ntBASIC16.08■□□□□ 0.16
PCDH9Q9HC56 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 AC138649.4-201ENST00000612222 287 ntBASIC16.08■□□□□ 0.16
PCDH9Q9HC56 MIR6069-201ENST00000620069 79 ntBASIC16.08■□□□□ 0.16
PCDH9Q9HC56 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 WASH3P-207ENST00000560956 1394 ntBASIC16.08■□□□□ 0.16
PCDH9Q9HC56 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 AJ011931.1-201ENST00000618749 2492 ntBASIC16.08■□□□□ 0.16
PCDH9Q9HC56 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH9Q9HC56 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms