Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 AL627223.1-201ENST00000416693 442 ntBASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 KRT18P32-201ENST00000424695 1287 ntBASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 YBX1P5-201ENST00000509441 847 ntBASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.96■□□□□ 0.15
TRIM56Q9BRZ2 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.14
TRIM56Q9BRZ2 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.96■□□□□ 0.14
TRIM56Q9BRZ2 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.14
TRIM56Q9BRZ2 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.96■□□□□ 0.14
TRIM56Q9BRZ2 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
TRIM56Q9BRZ2 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 PMS2P2-201ENST00000425039 1128 ntBASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 KRT8P44-201ENST00000441609 1350 ntBASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRIM56Q9BRZ2 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 SPDYE14P-201ENST00000442619 822 ntBASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms