Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 STOM-202ENST00000347359 870 ntTSL 2 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 RPL5P21-201ENST00000404620 815 ntBASIC14.03□□□□□ -0.16
PTP4A1Q93096 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 AC084364.1-201ENST00000551967 1556 ntBASIC14.03□□□□□ -0.16
PTP4A1Q93096 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 AC005912.2-201ENST00000619492 2400 ntBASIC14.03□□□□□ -0.16
PTP4A1Q93096 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
PTP4A1Q93096 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PTP4A1Q93096 AC015656.1-201ENST00000624209 3578 ntBASIC14.02□□□□□ -0.16
PTP4A1Q93096 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.02□□□□□ -0.16
PTP4A1Q93096 AC139749.1-202ENST00000617529 3139 ntBASIC14.02□□□□□ -0.16
PTP4A1Q93096 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
PTP4A1Q93096 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
PTP4A1Q93096 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
PTP4A1Q93096 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PTP4A1Q93096 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PTP4A1Q93096 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PTP4A1Q93096 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
PTP4A1Q93096 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
PTP4A1Q93096 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
PTP4A1Q93096 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC14.02□□□□□ -0.16
PTP4A1Q93096 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PTP4A1Q93096 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
PTP4A1Q93096 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
PTP4A1Q93096 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PTP4A1Q93096 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
PTP4A1Q93096 WASH3P-207ENST00000560956 1394 ntBASIC14.02□□□□□ -0.17
PTP4A1Q93096 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PTP4A1Q93096 FO538757.1-201ENST00000623083 1397 ntBASIC14.02□□□□□ -0.17
PTP4A1Q93096 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PTP4A1Q93096 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
PTP4A1Q93096 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
PTP4A1Q93096 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PTP4A1Q93096 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
PTP4A1Q93096 AC004461.1-201ENST00000412461 403 ntBASIC14.02□□□□□ -0.17
PTP4A1Q93096 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.02□□□□□ -0.17
PTP4A1Q93096 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.02□□□□□ -0.17
PTP4A1Q93096 HIST3H2BA-201ENST00000436555 524 ntBASIC14.02□□□□□ -0.17
PTP4A1Q93096 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.02□□□□□ -0.17
PTP4A1Q93096 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.02□□□□□ -0.17
PTP4A1Q93096 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PTP4A1Q93096 TSFM-210ENST00000550559 897 ntTSL 5 BASIC14.02□□□□□ -0.17
PTP4A1Q93096 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC14.02□□□□□ -0.17
PTP4A1Q93096 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.02□□□□□ -0.17
PTP4A1Q93096 AC055717.3-201ENST00000622967 595 ntBASIC14.02□□□□□ -0.17
PTP4A1Q93096 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PTP4A1Q93096 AC079781.4-201ENST00000641908 219 ntBASIC14.02□□□□□ -0.17
PTP4A1Q93096 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PTP4A1Q93096 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
PTP4A1Q93096 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PTP4A1Q93096 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
PTP4A1Q93096 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
PTP4A1Q93096 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.02□□□□□ -0.17
PTP4A1Q93096 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PTP4A1Q93096 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PTP4A1Q93096 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PTP4A1Q93096 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.02□□□□□ -0.17
PTP4A1Q93096 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.02□□□□□ -0.17
PTP4A1Q93096 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms