Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 FTH1P14-201ENST00000482930 551 ntBASIC4.86□□□□□ -1.63
SYNE1Q8NF91 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 RPS24-214ENST00000613865 538 ntTSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 HOTTIP-203ENST00000521028 3345 ntTSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 BDNF-202ENST00000356660 4018 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 FAM86MP-201ENST00000340703 885 ntBASIC4.85□□□□□ -1.63
SYNE1Q8NF91 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 FADS2-205ENST00000517839 469 ntTSL 3 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 WFDC1-204ENST00000613603 549 ntBASIC4.85□□□□□ -1.63
SYNE1Q8NF91 COX11-210ENST00000639671 696 ntBASIC4.85□□□□□ -1.63
SYNE1Q8NF91 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 DDAH1-201ENST00000284031 3920 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 ESPNL-206ENST00000612395 3673 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 KRT8P12-202ENST00000472924 1397 ntBASIC4.85□□□□□ -1.63
SYNE1Q8NF91 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 TUBB1P2-201ENST00000422712 1306 ntBASIC4.85□□□□□ -1.63
SYNE1Q8NF91 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 TUBB1P1-201ENST00000503144 1300 ntBASIC4.85□□□□□ -1.63
SYNE1Q8NF91 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 CU634019.7-201ENST00000624153 1185 ntBASIC4.85□□□□□ -1.63
SYNE1Q8NF91 FP236241.2-201ENST00000624906 1185 ntBASIC4.85□□□□□ -1.63
SYNE1Q8NF91 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 NOS3-201ENST00000297494 4388 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 ERN2-201ENST00000256797 3549 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 PCDHB4-201ENST00000194152 3825 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 WDR53-204ENST00000433160 887 ntTSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 AC021097.1-201ENST00000607902 574 ntBASIC4.85□□□□□ -1.63
SYNE1Q8NF91 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 G2E3-212ENST00000553504 3796 ntTSL 5 BASIC4.85□□□□□ -1.63
SYNE1Q8NF91 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms