Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 AC018529.1-201ENST00000613063 361 ntBASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 ELL2P1-201ENST00000413990 1906 ntBASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CCDC54Q8NEL0 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 MROH4P-201ENST00000431302 1578 ntBASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 WASH3P-207ENST00000560956 1394 ntBASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 FO538757.1-201ENST00000623083 1397 ntBASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 ALG1L8P-201ENST00000533887 760 ntBASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 AC105021.1-202ENST00000570572 669 ntBASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 AC105339.1-204ENST00000636249 355 ntBASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
CCDC54Q8NEL0 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms