Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
LMO4P61968 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC12.67□□□□□ -0.38
LMO4P61968 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
LMO4P61968 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 AC104457.1-201ENST00000401024 814 ntBASIC12.67□□□□□ -0.38
LMO4P61968 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC12.67□□□□□ -0.38
LMO4P61968 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 AC022616.1-201ENST00000518688 554 ntBASIC12.67□□□□□ -0.38
LMO4P61968 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 CD74-212ENST00000524315 584 ntTSL 5 BASIC12.67□□□□□ -0.38
LMO4P61968 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC12.67□□□□□ -0.38
LMO4P61968 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC12.67□□□□□ -0.38
LMO4P61968 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC12.67□□□□□ -0.38
LMO4P61968 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
LMO4P61968 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
LMO4P61968 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
LMO4P61968 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC12.67□□□□□ -0.38
LMO4P61968 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
LMO4P61968 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC12.66□□□□□ -0.38
LMO4P61968 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC12.66□□□□□ -0.38
LMO4P61968 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC12.66□□□□□ -0.38
LMO4P61968 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
LMO4P61968 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC12.66□□□□□ -0.38
LMO4P61968 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
LMO4P61968 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC12.66□□□□□ -0.38
LMO4P61968 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC12.66□□□□□ -0.38
LMO4P61968 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC12.66□□□□□ -0.38
LMO4P61968 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC12.66□□□□□ -0.38
LMO4P61968 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 EIF3FP3-201ENST00000434851 1086 ntBASIC12.66□□□□□ -0.38
LMO4P61968 Z93015.1-201ENST00000451718 390 ntBASIC12.66□□□□□ -0.38
LMO4P61968 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC12.66□□□□□ -0.38
LMO4P61968 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC12.66□□□□□ -0.38
LMO4P61968 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC12.66□□□□□ -0.38
LMO4P61968 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
LMO4P61968 MIR4741-201ENST00000579822 90 ntBASIC12.66□□□□□ -0.38
LMO4P61968 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC12.66□□□□□ -0.38
LMO4P61968 WAC-202ENST00000347934 2839 ntTSL 5 BASIC12.66□□□□□ -0.38
LMO4P61968 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC12.66□□□□□ -0.38
LMO4P61968 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
LMO4P61968 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 AC105250.1-201ENST00000509378 2057 ntBASIC12.66□□□□□ -0.38
LMO4P61968 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 AL139384.1-201ENST00000612143 3047 ntBASIC12.66□□□□□ -0.38
LMO4P61968 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC12.66□□□□□ -0.38
LMO4P61968 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LMO4P61968 AC026691.1-201ENST00000602502 2017 ntBASIC12.66□□□□□ -0.38
LMO4P61968 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC12.66□□□□□ -0.38
LMO4P61968 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
LMO4P61968 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
LMO4P61968 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
LMO4P61968 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC12.65□□□□□ -0.38
LMO4P61968 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
LMO4P61968 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC12.65□□□□□ -0.38
LMO4P61968 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms