Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
VCPP55072 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VCPP55072 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.71■□□□□ 0.27
VCPP55072 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
VCPP55072 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
VCPP55072 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.26
VCPP55072 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
VCPP55072 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.7■□□□□ 0.26
VCPP55072 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.7■□□□□ 0.26
VCPP55072 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.7■□□□□ 0.26
VCPP55072 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VCPP55072 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.7■□□□□ 0.26
VCPP55072 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
VCPP55072 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
VCPP55072 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.7■□□□□ 0.26
VCPP55072 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.7■□□□□ 0.26
VCPP55072 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VCPP55072 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC16.7■□□□□ 0.26
VCPP55072 KLF2P4-201ENST00000451959 1225 ntBASIC16.7■□□□□ 0.26
VCPP55072 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.7■□□□□ 0.26
VCPP55072 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.7■□□□□ 0.26
VCPP55072 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.7■□□□□ 0.26
VCPP55072 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.7■□□□□ 0.26
VCPP55072 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.7■□□□□ 0.26
VCPP55072 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
VCPP55072 AC243960.2-201ENST00000600996 747 ntBASIC16.7■□□□□ 0.26
VCPP55072 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.7■□□□□ 0.26
VCPP55072 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VCPP55072 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.7■□□□□ 0.26
VCPP55072 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.7■□□□□ 0.26
VCPP55072 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VCPP55072 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
VCPP55072 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VCPP55072 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.7■□□□□ 0.26
VCPP55072 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCPP55072 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.69■□□□□ 0.26
VCPP55072 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCPP55072 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCPP55072 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCPP55072 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCPP55072 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VCPP55072 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VCPP55072 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCPP55072 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.69■□□□□ 0.26
VCPP55072 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.69■□□□□ 0.26
VCPP55072 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCPP55072 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VCPP55072 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.69■□□□□ 0.26
VCPP55072 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC16.69■□□□□ 0.26
VCPP55072 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.69■□□□□ 0.26
VCPP55072 MIR6727-201ENST00000620702 65 ntBASIC16.69■□□□□ 0.26
VCPP55072 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VCPP55072 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VCPP55072 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VCPP55072 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCPP55072 AL136982.4-201ENST00000437689 1740 ntBASIC16.69■□□□□ 0.26
VCPP55072 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VCPP55072 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCPP55072 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VCPP55072 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
VCPP55072 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCPP55072 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VCPP55072 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCPP55072 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VCPP55072 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.69■□□□□ 0.26
VCPP55072 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VCPP55072 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.69■□□□□ 0.26
VCPP55072 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
VCPP55072 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 AP001282.1-201ENST00000531301 1499 ntBASIC16.68■□□□□ 0.26
VCPP55072 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
VCPP55072 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VCPP55072 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 TSPY26P-202ENST00000565928 3884 ntBASIC16.68■□□□□ 0.26
VCPP55072 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms