Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SHMT2P34897 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHMT2P34897 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
SHMT2P34897 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHMT2P34897 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.28■□□□□ 0.04
SHMT2P34897 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHMT2P34897 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SHMT2P34897 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
SHMT2P34897 AL391825.1-201ENST00000457671 1364 ntBASIC15.28■□□□□ 0.04
SHMT2P34897 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.28■□□□□ 0.04
SHMT2P34897 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHMT2P34897 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHMT2P34897 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHMT2P34897 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHMT2P34897 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHMT2P34897 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.28■□□□□ 0.04
SHMT2P34897 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.28■□□□□ 0.04
SHMT2P34897 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.28■□□□□ 0.04
SHMT2P34897 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.28■□□□□ 0.04
SHMT2P34897 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.28■□□□□ 0.04
SHMT2P34897 AC055876.2-201ENST00000531834 546 ntBASIC15.28■□□□□ 0.04
SHMT2P34897 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SHMT2P34897 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.28■□□□□ 0.04
SHMT2P34897 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC15.28■□□□□ 0.04
SHMT2P34897 AL132655.2-201ENST00000596276 594 ntBASIC15.28■□□□□ 0.04
SHMT2P34897 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.28■□□□□ 0.04
SHMT2P34897 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.28■□□□□ 0.04
SHMT2P34897 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SHMT2P34897 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHMT2P34897 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHMT2P34897 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHMT2P34897 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
SHMT2P34897 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHMT2P34897 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHMT2P34897 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHMT2P34897 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.28■□□□□ 0.04
SHMT2P34897 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.28■□□□□ 0.04
SHMT2P34897 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHMT2P34897 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.04
SHMT2P34897 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.27■□□□□ 0.04
SHMT2P34897 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SHMT2P34897 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
SHMT2P34897 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHMT2P34897 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHMT2P34897 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.27■□□□□ 0.04
SHMT2P34897 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHMT2P34897 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHMT2P34897 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
SHMT2P34897 AC023908.3-201ENST00000564211 3047 ntBASIC15.27■□□□□ 0.04
SHMT2P34897 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.27■□□□□ 0.04
SHMT2P34897 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
SHMT2P34897 CALY-203ENST00000368558 825 ntTSL 5 BASIC15.27■□□□□ 0.04
SHMT2P34897 PKIG-203ENST00000372887 769 ntTSL 3 BASIC15.27■□□□□ 0.04
SHMT2P34897 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
SHMT2P34897 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC15.27■□□□□ 0.04
SHMT2P34897 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
SHMT2P34897 TOMM22P5-201ENST00000416399 439 ntBASIC15.27■□□□□ 0.04
SHMT2P34897 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC15.27■□□□□ 0.04
SHMT2P34897 AL353779.1-201ENST00000434793 351 ntBASIC15.27■□□□□ 0.04
SHMT2P34897 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.27■□□□□ 0.04
SHMT2P34897 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.27■□□□□ 0.04
SHMT2P34897 GNAQP1-201ENST00000444815 1067 ntBASIC15.27■□□□□ 0.04
SHMT2P34897 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SHMT2P34897 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.27■□□□□ 0.04
SHMT2P34897 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.27■□□□□ 0.04
SHMT2P34897 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.27■□□□□ 0.04
SHMT2P34897 COX11-202ENST00000571584 1108 ntTSL 2 BASIC15.27■□□□□ 0.04
SHMT2P34897 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC15.27■□□□□ 0.04
SHMT2P34897 AF228730.6-201ENST00000641497 218 ntBASIC15.27■□□□□ 0.04
SHMT2P34897 AC084121.3-201ENST00000641716 218 ntBASIC15.27■□□□□ 0.04
SHMT2P34897 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SHMT2P34897 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SHMT2P34897 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SHMT2P34897 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SHMT2P34897 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
SHMT2P34897 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SHMT2P34897 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SHMT2P34897 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.27■□□□□ 0.03
SHMT2P34897 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.27■□□□□ 0.03
SHMT2P34897 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SHMT2P34897 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
SHMT2P34897 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SHMT2P34897 AC007541.1-201ENST00000570282 1469 ntBASIC15.27■□□□□ 0.03
SHMT2P34897 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SHMT2P34897 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SHMT2P34897 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.27■□□□□ 0.03
SHMT2P34897 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SHMT2P34897 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.26■□□□□ 0.03
SHMT2P34897 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.26■□□□□ 0.03
SHMT2P34897 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
SHMT2P34897 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SHMT2P34897 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SHMT2P34897 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.26■□□□□ 0.03
SHMT2P34897 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms