Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
HOXC9P31274 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC9P31274 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC9P31274 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC9P31274 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC20.33■□□□□ 0.85
HOXC9P31274 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC9P31274 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC20.33■□□□□ 0.85
HOXC9P31274 TSACC-208ENST00000481479 741 ntTSL 2 BASIC20.33■□□□□ 0.85
HOXC9P31274 AC026434.2-201ENST00000506094 1078 ntBASIC20.33■□□□□ 0.85
HOXC9P31274 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC9P31274 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
HOXC9P31274 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC20.33■□□□□ 0.85
HOXC9P31274 AC105129.2-201ENST00000559536 390 ntBASIC20.33■□□□□ 0.85
HOXC9P31274 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC20.33■□□□□ 0.85
HOXC9P31274 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC20.33■□□□□ 0.85
HOXC9P31274 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC20.33■□□□□ 0.84
HOXC9P31274 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC20.33■□□□□ 0.84
HOXC9P31274 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
HOXC9P31274 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC20.33■□□□□ 0.84
HOXC9P31274 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HOXC9P31274 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HOXC9P31274 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 PCDHB19P-201ENST00000570871 2371 ntBASIC20.32■□□□□ 0.84
HOXC9P31274 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC20.32■□□□□ 0.84
HOXC9P31274 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HOXC9P31274 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 AL136309.1-201ENST00000403917 691 ntBASIC20.32■□□□□ 0.84
HOXC9P31274 NDUFAB1P1-201ENST00000404262 460 ntBASIC20.32■□□□□ 0.84
HOXC9P31274 DEF8-202ENST00000418391 852 ntTSL 2 BASIC20.32■□□□□ 0.84
HOXC9P31274 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC20.32■□□□□ 0.84
HOXC9P31274 ATP6V0CP2-201ENST00000469409 207 ntBASIC20.32■□□□□ 0.84
HOXC9P31274 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 FTLP10-202ENST00000505798 471 ntBASIC20.32■□□□□ 0.84
HOXC9P31274 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC20.32■□□□□ 0.84
HOXC9P31274 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC20.32■□□□□ 0.84
HOXC9P31274 CHMP4BP1-201ENST00000556017 588 ntBASIC20.32■□□□□ 0.84
HOXC9P31274 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC20.32■□□□□ 0.84
HOXC9P31274 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HOXC9P31274 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC20.32■□□□□ 0.84
HOXC9P31274 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC20.32■□□□□ 0.84
HOXC9P31274 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC20.32■□□□□ 0.84
HOXC9P31274 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC9P31274 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC20.31■□□□□ 0.84
HOXC9P31274 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC9P31274 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC9P31274 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC20.31■□□□□ 0.84
HOXC9P31274 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC9P31274 SDCCAG3P2-201ENST00000326105 1023 ntBASIC20.31■□□□□ 0.84
HOXC9P31274 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
HOXC9P31274 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
HOXC9P31274 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC20.31■□□□□ 0.84
HOXC9P31274 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC20.31■□□□□ 0.84
HOXC9P31274 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC20.31■□□□□ 0.84
HOXC9P31274 MIR3619-201ENST00000579667 83 ntBASIC20.31■□□□□ 0.84
HOXC9P31274 NAT9-222ENST00000583476 583 ntTSL 3 BASIC20.31■□□□□ 0.84
HOXC9P31274 NDUFV2P1-201ENST00000596415 907 ntBASIC20.31■□□□□ 0.84
HOXC9P31274 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
HOXC9P31274 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC20.31■□□□□ 0.84
HOXC9P31274 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC20.31■□□□□ 0.84
HOXC9P31274 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC9P31274 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC9P31274 AC105250.1-201ENST00000509378 2057 ntBASIC20.31■□□□□ 0.84
HOXC9P31274 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC9P31274 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC9P31274 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC20.31■□□□□ 0.84
HOXC9P31274 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC9P31274 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC9P31274 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC20.3■□□□□ 0.84
HOXC9P31274 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC20.3■□□□□ 0.84
HOXC9P31274 STK33-217ENST00000534493 1895 ntTSL 2 BASIC20.3■□□□□ 0.84
HOXC9P31274 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC20.3■□□□□ 0.84
HOXC9P31274 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
HOXC9P31274 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 AL360270.3-201ENST00000609118 1348 ntBASIC20.3■□□□□ 0.84
HOXC9P31274 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC20.3■□□□□ 0.84
HOXC9P31274 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC20.3■□□□□ 0.84
HOXC9P31274 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms