Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 DBET-201ENST00000630918 3363 ntBASIC18.36■□□□□ 0.53
HMGB1P09429 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.36■□□□□ 0.53
HMGB1P09429 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
HMGB1P09429 NORAD-201ENST00000565493 5339 ntBASIC18.36■□□□□ 0.53
HMGB1P09429 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGB1P09429 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 AC091951.1-201ENST00000512854 2465 ntBASIC18.35■□□□□ 0.53
HMGB1P09429 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 AGAP7P-201ENST00000582299 2062 ntBASIC18.35■□□□□ 0.53
HMGB1P09429 AGAP14-201ENST00000624701 2060 ntBASIC18.35■□□□□ 0.53
HMGB1P09429 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC18.35■□□□□ 0.53
HMGB1P09429 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 AL596257.1-201ENST00000641463 2694 ntBASIC18.35■□□□□ 0.53
HMGB1P09429 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
HMGB1P09429 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 AC104457.1-201ENST00000401024 814 ntBASIC18.35■□□□□ 0.53
HMGB1P09429 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC18.35■□□□□ 0.53
HMGB1P09429 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.35■□□□□ 0.53
HMGB1P09429 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC18.35■□□□□ 0.53
HMGB1P09429 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC18.35■□□□□ 0.53
HMGB1P09429 RNA5SP421-201ENST00000516864 134 ntBASIC18.35■□□□□ 0.53
HMGB1P09429 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18.35■□□□□ 0.53
HMGB1P09429 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.35■□□□□ 0.53
HMGB1P09429 AC005498.2-205ENST00000593218 784 ntBASIC18.35■□□□□ 0.53
HMGB1P09429 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGB1P09429 AL391069.4-201ENST00000609583 481 ntBASIC18.35■□□□□ 0.53
HMGB1P09429 GPR39-203ENST00000622084 900 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGB1P09429 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
HMGB1P09429 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
HMGB1P09429 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGB1P09429 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGB1P09429 AC103702.1-201ENST00000548801 2630 ntBASIC18.35■□□□□ 0.53
HMGB1P09429 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
HMGB1P09429 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
HMGB1P09429 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGB1P09429 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGB1P09429 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGB1P09429 AC067930.6-201ENST00000623257 4947 ntBASIC18.34■□□□□ 0.53
HMGB1P09429 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
HMGB1P09429 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
HMGB1P09429 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.34■□□□□ 0.53
HMGB1P09429 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGB1P09429 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGB1P09429 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGB1P09429 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGB1P09429 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
HMGB1P09429 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 AC093214.1-201ENST00000511688 1107 ntBASIC18.34■□□□□ 0.53
HMGB1P09429 FTH1-202ENST00000526640 786 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGB1P09429 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.34■□□□□ 0.53
HMGB1P09429 AQP6-203ENST00000551733 849 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGB1P09429 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGB1P09429 AC011467.4-201ENST00000594891 528 ntBASIC18.34■□□□□ 0.53
HMGB1P09429 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC18.34■□□□□ 0.53
HMGB1P09429 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.34■□□□□ 0.53
HMGB1P09429 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
HMGB1P09429 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.34■□□□□ 0.53
HMGB1P09429 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HMGB1P09429 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
HMGB1P09429 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HMGB1P09429 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms