Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 SLC9A3P2-201ENST00000447821 2021 ntBASIC11.79□□□□□ -0.52
HLA-DQA1P01909 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 SIGLEC16-201ENST00000599858 1437 ntBASIC11.79□□□□□ -0.52
HLA-DQA1P01909 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 AC246785.2-201ENST00000432512 513 ntBASIC11.79□□□□□ -0.52
HLA-DQA1P01909 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 TPSP2-201ENST00000561760 610 ntBASIC11.79□□□□□ -0.52
HLA-DQA1P01909 AC092329.2-201ENST00000598402 547 ntBASIC11.79□□□□□ -0.52
HLA-DQA1P01909 AL365330.1-201ENST00000607459 531 ntBASIC11.79□□□□□ -0.52
HLA-DQA1P01909 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 MST1P2-201ENST00000457982 2291 ntBASIC11.78□□□□□ -0.52
HLA-DQA1P01909 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 PPIH-202ENST00000372549 327 ntTSL 3 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 HCG4P8-203ENST00000443049 980 ntBASIC11.78□□□□□ -0.52
HLA-DQA1P01909 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 COPE-211ENST00000600932 1144 ntTSL 5 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DQA1P01909 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 743 ms