Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LDLRP01130 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDLRP01130 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LDLRP01130 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDLRP01130 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LDLRP01130 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDLRP01130 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.16■□□□□ 0.02
LDLRP01130 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDLRP01130 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.15■□□□□ 0.02
LDLRP01130 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
LDLRP01130 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.15■□□□□ 0.02
LDLRP01130 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
LDLRP01130 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
LDLRP01130 COX5BP8-201ENST00000416911 349 ntBASIC15.15■□□□□ 0.02
LDLRP01130 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.15■□□□□ 0.02
LDLRP01130 SPCS2P4-201ENST00000436160 681 ntBASIC15.15■□□□□ 0.02
LDLRP01130 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC15.15■□□□□ 0.02
LDLRP01130 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
LDLRP01130 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.15■□□□□ 0.02
LDLRP01130 SLC25A6P2-201ENST00000497974 877 ntBASIC15.15■□□□□ 0.02
LDLRP01130 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.15■□□□□ 0.02
LDLRP01130 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.15■□□□□ 0.02
LDLRP01130 AC069120.2-201ENST00000524091 540 ntBASIC15.15■□□□□ 0.02
LDLRP01130 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.15■□□□□ 0.02
LDLRP01130 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.15■□□□□ 0.02
LDLRP01130 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
LDLRP01130 AC026150.2-201ENST00000564693 1156 ntBASIC15.15■□□□□ 0.02
LDLRP01130 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.15■□□□□ 0.02
LDLRP01130 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC15.15■□□□□ 0.02
LDLRP01130 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.15■□□□□ 0.02
LDLRP01130 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
LDLRP01130 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 AC011477.6-201ENST00000604980 1927 ntBASIC15.15■□□□□ 0.02
LDLRP01130 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
LDLRP01130 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LDLRP01130 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
LDLRP01130 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.15■□□□□ 0.02
LDLRP01130 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.14■□□□□ 0.01
LDLRP01130 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.14■□□□□ 0.01
LDLRP01130 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
LDLRP01130 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.14■□□□□ 0.01
LDLRP01130 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.14■□□□□ 0.01
LDLRP01130 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.14■□□□□ 0.01
LDLRP01130 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
LDLRP01130 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
LDLRP01130 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.14■□□□□ 0.01
LDLRP01130 PIN1P1-201ENST00000412108 996 ntBASIC15.14■□□□□ 0.01
LDLRP01130 SPDYE14P-201ENST00000442619 822 ntBASIC15.14■□□□□ 0.01
LDLRP01130 RN7SL692P-201ENST00000464677 288 ntBASIC15.14■□□□□ 0.01
LDLRP01130 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.14■□□□□ 0.01
LDLRP01130 AC097493.3-201ENST00000509725 367 ntBASIC15.14■□□□□ 0.01
LDLRP01130 SERBP1P5-201ENST00000510079 1181 ntBASIC15.14■□□□□ 0.01
LDLRP01130 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
LDLRP01130 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.14■□□□□ 0.01
LDLRP01130 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.14■□□□□ 0.01
LDLRP01130 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.14■□□□□ 0.01
LDLRP01130 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.14■□□□□ 0.01
LDLRP01130 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
LDLRP01130 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.14■□□□□ 0.01
LDLRP01130 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
LDLRP01130 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.14■□□□□ 0.01
LDLRP01130 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
LDLRP01130 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.14■□□□□ 0.01
LDLRP01130 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
LDLRP01130 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.14■□□□□ 0.01
LDLRP01130 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms