Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.25■□□□□ 0.03
SIX3O95343 LINC01101-201ENST00000622953 1884 ntBASIC15.25■□□□□ 0.03
SIX3O95343 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.25■□□□□ 0.03
SIX3O95343 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.25■□□□□ 0.03
SIX3O95343 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SIX3O95343 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.25■□□□□ 0.03
SIX3O95343 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
SIX3O95343 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SIX3O95343 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SIX3O95343 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
SIX3O95343 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.25■□□□□ 0.03
SIX3O95343 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.25■□□□□ 0.03
SIX3O95343 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.25■□□□□ 0.03
SIX3O95343 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SIX3O95343 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SIX3O95343 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.25■□□□□ 0.03
SIX3O95343 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SIX3O95343 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.25■□□□□ 0.03
SIX3O95343 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.25■□□□□ 0.03
SIX3O95343 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SIX3O95343 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.25■□□□□ 0.03
SIX3O95343 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SIX3O95343 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SIX3O95343 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SIX3O95343 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SIX3O95343 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SIX3O95343 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SIX3O95343 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SIX3O95343 ZBED1P1-201ENST00000502364 1930 ntBASIC15.25■□□□□ 0.03
SIX3O95343 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SIX3O95343 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
SIX3O95343 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SIX3O95343 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SIX3O95343 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SIX3O95343 MROH4P-201ENST00000431302 1578 ntBASIC15.24■□□□□ 0.03
SIX3O95343 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.24■□□□□ 0.03
SIX3O95343 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.24■□□□□ 0.03
SIX3O95343 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.24■□□□□ 0.03
SIX3O95343 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.24■□□□□ 0.03
SIX3O95343 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SIX3O95343 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.24■□□□□ 0.03
SIX3O95343 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 SPDYE7P-202ENST00000420373 878 ntBASIC15.24■□□□□ 0.03
SIX3O95343 CNN2P11-201ENST00000429351 262 ntBASIC15.24■□□□□ 0.03
SIX3O95343 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.24■□□□□ 0.03
SIX3O95343 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.24■□□□□ 0.03
SIX3O95343 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.24■□□□□ 0.03
SIX3O95343 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.24■□□□□ 0.03
SIX3O95343 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.24■□□□□ 0.03
SIX3O95343 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.24■□□□□ 0.03
SIX3O95343 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SIX3O95343 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SIX3O95343 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.24■□□□□ 0.03
SIX3O95343 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
SIX3O95343 AL009178.2-201ENST00000597278 2719 ntBASIC15.24■□□□□ 0.03
SIX3O95343 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
SIX3O95343 FGD5P1-202ENST00000614866 2498 ntBASIC15.24■□□□□ 0.03
SIX3O95343 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.24■□□□□ 0.03
SIX3O95343 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SIX3O95343 CETN4P-206ENST00000642099 2168 ntBASIC15.24■□□□□ 0.03
SIX3O95343 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.24■□□□□ 0.03
SIX3O95343 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SIX3O95343 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SIX3O95343 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SIX3O95343 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 AC023908.3-201ENST00000564211 3047 ntBASIC15.23■□□□□ 0.03
SIX3O95343 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.23■□□□□ 0.03
SIX3O95343 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SIX3O95343 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 AL161772.1-201ENST00000610494 4412 ntBASIC15.23■□□□□ 0.03
SIX3O95343 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.23■□□□□ 0.03
SIX3O95343 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 RPL5P21-201ENST00000404620 815 ntBASIC15.23■□□□□ 0.03
SIX3O95343 RPL37AP1-201ENST00000412502 279 ntBASIC15.23■□□□□ 0.03
SIX3O95343 AC254562.1-201ENST00000417586 456 ntBASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms