Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 CD81-202ENST00000381036 880 ntTSL 3 BASIC13.75□□□□□ -0.21
LMX1BO60663 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC13.75□□□□□ -0.21
LMX1BO60663 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC13.75□□□□□ -0.21
LMX1BO60663 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC13.75□□□□□ -0.21
LMX1BO60663 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
LMX1BO60663 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC13.75□□□□□ -0.21
LMX1BO60663 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
LMX1BO60663 AL450472.2-201ENST00000603663 1156 ntBASIC13.75□□□□□ -0.21
LMX1BO60663 AL662799.1-202ENST00000614205 422 ntBASIC13.75□□□□□ -0.21
LMX1BO60663 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC13.75□□□□□ -0.21
LMX1BO60663 AC025048.6-201ENST00000634326 1161 ntBASIC13.75□□□□□ -0.21
LMX1BO60663 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.75□□□□□ -0.21
LMX1BO60663 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.75□□□□□ -0.21
LMX1BO60663 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC13.75□□□□□ -0.21
LMX1BO60663 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.75□□□□□ -0.21
LMX1BO60663 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
LMX1BO60663 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LMX1BO60663 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LMX1BO60663 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.74□□□□□ -0.21
LMX1BO60663 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LMX1BO60663 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
LMX1BO60663 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
LMX1BO60663 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LMX1BO60663 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LMX1BO60663 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LMX1BO60663 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LMX1BO60663 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
LMX1BO60663 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC13.74□□□□□ -0.21
LMX1BO60663 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC13.74□□□□□ -0.21
LMX1BO60663 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC13.74□□□□□ -0.21
LMX1BO60663 AL359881.2-201ENST00000602973 570 ntBASIC13.74□□□□□ -0.21
LMX1BO60663 AL590560.3-201ENST00000623350 461 ntBASIC13.74□□□□□ -0.21
LMX1BO60663 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LMX1BO60663 AC099063.4-201ENST00000641099 1602 ntBASIC13.74□□□□□ -0.21
LMX1BO60663 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LMX1BO60663 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
LMX1BO60663 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.74□□□□□ -0.21
LMX1BO60663 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LMX1BO60663 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.74□□□□□ -0.21
LMX1BO60663 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
LMX1BO60663 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
LMX1BO60663 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LMX1BO60663 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
LMX1BO60663 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
LMX1BO60663 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.74□□□□□ -0.21
LMX1BO60663 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LMX1BO60663 AC100757.3-201ENST00000622361 1406 ntBASIC13.73□□□□□ -0.21
LMX1BO60663 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC13.73□□□□□ -0.21
LMX1BO60663 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
LMX1BO60663 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC13.73□□□□□ -0.21
LMX1BO60663 TDG-209ENST00000544861 1387 ntTSL 2 BASIC13.73□□□□□ -0.21
LMX1BO60663 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
LMX1BO60663 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.73□□□□□ -0.21
LMX1BO60663 AC023024.2-201ENST00000623561 1993 ntBASIC13.73□□□□□ -0.21
LMX1BO60663 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
LMX1BO60663 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC13.73□□□□□ -0.21
LMX1BO60663 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC13.73□□□□□ -0.21
LMX1BO60663 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC13.73□□□□□ -0.21
LMX1BO60663 PHKG1P2-201ENST00000457537 863 ntBASIC13.73□□□□□ -0.21
LMX1BO60663 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC13.73□□□□□ -0.21
LMX1BO60663 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC13.73□□□□□ -0.21
LMX1BO60663 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC13.73□□□□□ -0.21
LMX1BO60663 SPDYE22P-201ENST00000582158 798 ntBASIC13.73□□□□□ -0.21
LMX1BO60663 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC13.73□□□□□ -0.21
LMX1BO60663 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 AC003101.2-201ENST00000612557 442 ntBASIC13.73□□□□□ -0.21
LMX1BO60663 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.73□□□□□ -0.21
LMX1BO60663 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
LMX1BO60663 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC13.73□□□□□ -0.21
LMX1BO60663 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC13.73□□□□□ -0.21
LMX1BO60663 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 AC007686.3-201ENST00000619017 3487 ntBASIC13.73□□□□□ -0.21
LMX1BO60663 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LMX1BO60663 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms