Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 AC023024.2-201ENST00000623561 1993 ntBASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 CLK3P2-201ENST00000427566 1453 ntBASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC19.99■□□□□ 0.79
SMC4Q9NTJ3 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 RPL5P21-201ENST00000404620 815 ntBASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 TPRX2P-201ENST00000535362 881 ntBASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 TBCB-211ENST00000589996 724 ntTSL 3 BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 AC000095.1-201ENST00000603208 874 ntBASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 AL096865.1-201ENST00000606796 927 ntBASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 AC025181.2-201ENST00000606994 802 ntBASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC4Q9NTJ3 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 POLL-217ENST00000628479 1953 ntTSL 5 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 AC126365.1-201ENST00000578585 1514 ntBASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 TSPY16P-201ENST00000449843 468 ntBASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC19.97■□□□□ 0.79
SMC4Q9NTJ3 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 RERG-209ENST00000546331 1383 ntTSL 2 BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 SPTLC1P1-201ENST00000447199 261 ntBASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 AC009118.2-201ENST00000613275 655 ntBASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC4Q9NTJ3 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms