Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 AC126365.1-201ENST00000578585 1514 ntBASIC16.59■□□□□ 0.25
CISHQ9NSE2 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CISHQ9NSE2 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.59■□□□□ 0.25
CISHQ9NSE2 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CISHQ9NSE2 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CISHQ9NSE2 AC006486.2-201ENST00000624246 2199 ntBASIC16.58■□□□□ 0.25
CISHQ9NSE2 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CISHQ9NSE2 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CISHQ9NSE2 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CISHQ9NSE2 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
CISHQ9NSE2 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CISHQ9NSE2 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.58■□□□□ 0.25
CISHQ9NSE2 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CISHQ9NSE2 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CISHQ9NSE2 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CISHQ9NSE2 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CISHQ9NSE2 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 AC087499.6-201ENST00000411576 835 ntBASIC16.58■□□□□ 0.24
CISHQ9NSE2 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CISHQ9NSE2 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 AC123567.1-201ENST00000548294 1261 ntBASIC16.58■□□□□ 0.24
CISHQ9NSE2 AC190387.1-201ENST00000551683 408 ntBASIC16.58■□□□□ 0.24
CISHQ9NSE2 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 AC093726.1-201ENST00000608064 963 ntBASIC16.58■□□□□ 0.24
CISHQ9NSE2 AL662799.1-202ENST00000614205 422 ntBASIC16.58■□□□□ 0.24
CISHQ9NSE2 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CISHQ9NSE2 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CISHQ9NSE2 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 AC148477.4-201ENST00000613430 1793 ntBASIC16.58■□□□□ 0.24
CISHQ9NSE2 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CISHQ9NSE2 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CISHQ9NSE2 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CISHQ9NSE2 AC144831.1-201ENST00000573312 2656 ntBASIC16.58■□□□□ 0.24
CISHQ9NSE2 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CISHQ9NSE2 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CISHQ9NSE2 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CISHQ9NSE2 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.58■□□□□ 0.24
CISHQ9NSE2 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CISHQ9NSE2 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CISHQ9NSE2 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CISHQ9NSE2 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.57■□□□□ 0.24
CISHQ9NSE2 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
CISHQ9NSE2 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.57■□□□□ 0.24
CISHQ9NSE2 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CISHQ9NSE2 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.57■□□□□ 0.24
CISHQ9NSE2 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CISHQ9NSE2 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CISHQ9NSE2 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CISHQ9NSE2 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CISHQ9NSE2 AC023024.2-201ENST00000623561 1993 ntBASIC16.57■□□□□ 0.24
CISHQ9NSE2 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CISHQ9NSE2 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CISHQ9NSE2 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CISHQ9NSE2 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CISHQ9NSE2 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CISHQ9NSE2 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.57■□□□□ 0.24
CISHQ9NSE2 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CISHQ9NSE2 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CISHQ9NSE2 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CISHQ9NSE2 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CISHQ9NSE2 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.57■□□□□ 0.24
CISHQ9NSE2 AC098850.1-201ENST00000419919 790 ntBASIC16.57■□□□□ 0.24
CISHQ9NSE2 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.57■□□□□ 0.24
CISHQ9NSE2 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CISHQ9NSE2 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.57■□□□□ 0.24
CISHQ9NSE2 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.57■□□□□ 0.24
CISHQ9NSE2 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
CISHQ9NSE2 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.57■□□□□ 0.24
CISHQ9NSE2 AL049840.4-201ENST00000602422 811 ntBASIC16.57■□□□□ 0.24
CISHQ9NSE2 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.57■□□□□ 0.24
CISHQ9NSE2 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.57■□□□□ 0.24
CISHQ9NSE2 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CISHQ9NSE2 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CISHQ9NSE2 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms