Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM39Q9HCM9 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 AL133267.1-201ENST00000398220 340 ntBASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 KRT18P43-201ENST00000469825 1281 ntBASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 AC036164.1-201ENST00000570544 333 ntBASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 AC093726.1-201ENST00000608064 963 ntBASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.5■□□□□ 0.07
TRIM39Q9HCM9 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 AC105917.1-201ENST00000506637 2539 ntBASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 CLK3P2-201ENST00000427566 1453 ntBASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 AC104596.2-201ENST00000512793 793 ntBASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 AC123567.1-201ENST00000548294 1261 ntBASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM39Q9HCM9 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms