Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 AL607033.1-201ENST00000623900 1599 ntBASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 AC005237.2-201ENST00000434368 219 ntBASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 PHKG1P2-201ENST00000457537 863 ntBASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 LINC00528-201ENST00000600723 2160 ntBASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 AL513210.1-201ENST00000629608 234 ntBASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRIM56Q9BRZ2 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 AP006288.1-201ENST00000446065 395 ntBASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 ALG1L8P-201ENST00000533887 760 ntBASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 AC005829.1-201ENST00000570002 483 ntBASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 AC134684.3-201ENST00000641758 218 ntBASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
TRIM56Q9BRZ2 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms