Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 AC068587.6-202ENST00000641839 5619 ntBASIC12.05□□□□□ -0.48
CCDC140Q96MF4 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 AC025181.2-201ENST00000606994 802 ntBASIC12.05□□□□□ -0.48
CCDC140Q96MF4 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 POLL-217ENST00000628479 1953 ntTSL 5 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 MECR-202ENST00000373791 2416 ntTSL 2 BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
CCDC140Q96MF4 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 CLK3P2-201ENST00000427566 1453 ntBASIC12.04□□□□□ -0.48
CCDC140Q96MF4 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
CCDC140Q96MF4 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms