Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.04■□□□□ -0
CLHC1Q8NHS4 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.04■□□□□ -0
CLHC1Q8NHS4 OR2I1P-210ENST00000642037 4691 ntBASIC15.04■□□□□ -0
CLHC1Q8NHS4 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
CLHC1Q8NHS4 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.04■□□□□ -0
CLHC1Q8NHS4 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLHC1Q8NHS4 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLHC1Q8NHS4 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.04■□□□□ -0
CLHC1Q8NHS4 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLHC1Q8NHS4 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.04■□□□□ -0
CLHC1Q8NHS4 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.04■□□□□ -0
CLHC1Q8NHS4 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.04■□□□□ -0
CLHC1Q8NHS4 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLHC1Q8NHS4 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 AL645939.2-201ENST00000427340 991 ntBASIC15.03■□□□□ -0
CLHC1Q8NHS4 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.03■□□□□ -0
CLHC1Q8NHS4 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.03■□□□□ -0
CLHC1Q8NHS4 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.02■□□□□ -0
CLHC1Q8NHS4 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CLHC1Q8NHS4 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.02■□□□□ -0
CLHC1Q8NHS4 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
CLHC1Q8NHS4 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.02■□□□□ -0
CLHC1Q8NHS4 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CLHC1Q8NHS4 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
CLHC1Q8NHS4 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CLHC1Q8NHS4 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CLHC1Q8NHS4 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.02■□□□□ -0
CLHC1Q8NHS4 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
CLHC1Q8NHS4 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CLHC1Q8NHS4 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CLHC1Q8NHS4 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.02■□□□□ -0
CLHC1Q8NHS4 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.02■□□□□ -0
CLHC1Q8NHS4 AC136604.1-201ENST00000418535 575 ntBASIC15.02■□□□□ -0
CLHC1Q8NHS4 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.02■□□□□ -0
CLHC1Q8NHS4 GPS2P2-201ENST00000430745 888 ntBASIC15.02■□□□□ -0
CLHC1Q8NHS4 MTND6P24-201ENST00000440466 518 ntBASIC15.02■□□□□ -0
CLHC1Q8NHS4 DNAJB3-201ENST00000446806 729 ntBASIC15.02■□□□□ -0
CLHC1Q8NHS4 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.02■□□□□ -0
CLHC1Q8NHS4 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.02■□□□□ -0
CLHC1Q8NHS4 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.02■□□□□ -0
CLHC1Q8NHS4 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.02■□□□□ -0
CLHC1Q8NHS4 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.02■□□□□ -0
CLHC1Q8NHS4 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLHC1Q8NHS4 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLHC1Q8NHS4 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLHC1Q8NHS4 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLHC1Q8NHS4 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLHC1Q8NHS4 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CLHC1Q8NHS4 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLHC1Q8NHS4 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.02□□□□□ -0.01
CLHC1Q8NHS4 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CLHC1Q8NHS4 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CLHC1Q8NHS4 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLHC1Q8NHS4 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.02□□□□□ -0.01
CLHC1Q8NHS4 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLHC1Q8NHS4 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.02□□□□□ -0.01
CLHC1Q8NHS4 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
CLHC1Q8NHS4 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
CLHC1Q8NHS4 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLHC1Q8NHS4 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLHC1Q8NHS4 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLHC1Q8NHS4 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.01□□□□□ -0.01
CLHC1Q8NHS4 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
CLHC1Q8NHS4 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLHC1Q8NHS4 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CLHC1Q8NHS4 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms