Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC018695.6-201ENST00000614011 534 ntBASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 AL391280.1-201ENST00000506969 1062 ntBASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 AC097359.3-201ENST00000603982 1210 ntBASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 PKD1P5-201ENST00000532415 10291 ntBASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC18.3■□□□□ 0.52
SMC1BQ8NDV3 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 B9D1-203ENST00000395615 805 ntTSL 3 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 AL136309.1-201ENST00000403917 691 ntBASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 AGPAT5P1-201ENST00000455855 1019 ntBASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 AC018463.1-201ENST00000456674 917 ntBASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 FOS-204ENST00000554617 796 ntTSL 2 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 AC005324.6-201ENST00000587972 613 ntBASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SMC1BQ8NDV3 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms