Protein–RNA interactions for Protein: Q8IVM7

LINC00346, Putative uncharacterized protein encoded by LINC00346, humanhuman

Predictions only

Length 164 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00346Q8IVM7 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 KRT8P12-202ENST00000472924 1397 ntBASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 FO393414.2-201ENST00000405153 598 ntBASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 SPDYE7P-202ENST00000420373 878 ntBASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 DAD1-205ENST00000543337 501 ntTSL 3 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 CALM1-205ENST00000553542 877 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 AL079307.3-201ENST00000556114 283 ntBASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 OR2I1P-210ENST00000642037 4691 ntBASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00346Q8IVM7 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 TARDBPP1-201ENST00000442013 1203 ntBASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 AP006288.1-201ENST00000446065 395 ntBASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 AC004967.1-201ENST00000453589 447 ntBASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 SATB1-217ENST00000493952 626 ntTSL 3 BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 PRR29-209ENST00000582540 967 ntTSL 2 BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 LINC00628-201ENST00000628516 1289 ntBASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 PARN-202ENST00000420015 2360 ntTSL 2 BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 AC097376.2-205ENST00000610159 5334 ntBASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 STRN-202ENST00000379213 2254 ntTSL 5 BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 AC126365.1-201ENST00000578585 1514 ntBASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00346Q8IVM7 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
LINC00346Q8IVM7 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
LINC00346Q8IVM7 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC13.83□□□□□ -0.19
LINC00346Q8IVM7 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
LINC00346Q8IVM7 CETN4P-206ENST00000642099 2168 ntBASIC13.83□□□□□ -0.19
LINC00346Q8IVM7 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms