Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 AC092171.3-201ENST00000610122 2651 ntBASIC20.78■□□□□ 0.92
NPHP3Q7Z494 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 AC073150.1-201ENST00000450406 1084 ntBASIC20.78■□□□□ 0.92
NPHP3Q7Z494 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 DUX4L47-201ENST00000566374 394 ntBASIC20.78■□□□□ 0.92
NPHP3Q7Z494 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 AC092171.5-201ENST00000608012 942 ntBASIC20.78■□□□□ 0.92
NPHP3Q7Z494 AC051619.9-201ENST00000623237 597 ntBASIC20.78■□□□□ 0.92
NPHP3Q7Z494 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC20.78■□□□□ 0.92
NPHP3Q7Z494 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP3Q7Z494 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP3Q7Z494 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
NPHP3Q7Z494 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP3Q7Z494 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC20.77■□□□□ 0.92
NPHP3Q7Z494 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
NPHP3Q7Z494 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP3Q7Z494 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP3Q7Z494 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP3Q7Z494 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP3Q7Z494 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP3Q7Z494 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP3Q7Z494 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC20.77■□□□□ 0.92
NPHP3Q7Z494 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP3Q7Z494 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC20.77■□□□□ 0.92
NPHP3Q7Z494 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.77■□□□□ 0.92
NPHP3Q7Z494 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
NPHP3Q7Z494 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
NPHP3Q7Z494 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
NPHP3Q7Z494 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
NPHP3Q7Z494 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
NPHP3Q7Z494 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
NPHP3Q7Z494 AC078991.1-201ENST00000437297 610 ntBASIC20.77■□□□□ 0.91
NPHP3Q7Z494 RPL18P13-201ENST00000478088 569 ntBASIC20.77■□□□□ 0.91
NPHP3Q7Z494 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
NPHP3Q7Z494 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC20.77■□□□□ 0.91
NPHP3Q7Z494 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC20.77■□□□□ 0.91
NPHP3Q7Z494 YRDCP1-201ENST00000621419 643 ntBASIC20.77■□□□□ 0.91
NPHP3Q7Z494 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC20.77■□□□□ 0.91
NPHP3Q7Z494 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC20.77■□□□□ 0.91
NPHP3Q7Z494 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
NPHP3Q7Z494 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 TBC1D3J-201ENST00000620719 1426 ntBASIC20.76■□□□□ 0.91
NPHP3Q7Z494 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 RN7SKP175-201ENST00000408472 289 ntBASIC20.76■□□□□ 0.91
NPHP3Q7Z494 KRT18P66-201ENST00000452970 1269 ntBASIC20.76■□□□□ 0.91
NPHP3Q7Z494 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 AC009779.1-201ENST00000551138 283 ntBASIC20.76■□□□□ 0.91
NPHP3Q7Z494 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 AC132192.2-201ENST00000596206 1147 ntBASIC20.76■□□□□ 0.91
NPHP3Q7Z494 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 AC018695.7-201ENST00000624587 2492 ntBASIC20.76■□□□□ 0.91
NPHP3Q7Z494 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC20.76■□□□□ 0.91
NPHP3Q7Z494 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms