Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
KRT28Q7Z3Y7 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
KRT28Q7Z3Y7 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC20.72■□□□□ 0.91
KRT28Q7Z3Y7 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 HNRNPA1P36-201ENST00000521313 955 ntBASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 COX6A1P2-201ENST00000620597 330 ntBASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 TKT-202ENST00000423516 2075 ntTSL 2 BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
KRT28Q7Z3Y7 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
KRT28Q7Z3Y7 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 AL596087.1-201ENST00000400979 1969 ntBASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 CA12-203ENST00000422263 2556 ntTSL 2 BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
KRT28Q7Z3Y7 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 AC073150.1-201ENST00000450406 1084 ntBASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
KRT28Q7Z3Y7 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms