Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
KRT39Q6A163 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
KRT39Q6A163 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
KRT39Q6A163 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.82■□□□□ 0.28
KRT39Q6A163 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
KRT39Q6A163 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
KRT39Q6A163 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.82■□□□□ 0.28
KRT39Q6A163 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
KRT39Q6A163 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
KRT39Q6A163 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
KRT39Q6A163 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.82■□□□□ 0.28
KRT39Q6A163 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
KRT39Q6A163 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
KRT39Q6A163 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
KRT39Q6A163 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.82■□□□□ 0.28
KRT39Q6A163 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.82■□□□□ 0.28
KRT39Q6A163 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
KRT39Q6A163 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
KRT39Q6A163 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
KRT39Q6A163 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
KRT39Q6A163 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
KRT39Q6A163 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.82■□□□□ 0.28
KRT39Q6A163 UGT1A2P-201ENST00000454886 866 ntBASIC16.82■□□□□ 0.28
KRT39Q6A163 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
KRT39Q6A163 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.82■□□□□ 0.28
KRT39Q6A163 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
KRT39Q6A163 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.82■□□□□ 0.28
KRT39Q6A163 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.82■□□□□ 0.28
KRT39Q6A163 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.82■□□□□ 0.28
KRT39Q6A163 AC025181.2-201ENST00000606994 802 ntBASIC16.82■□□□□ 0.28
KRT39Q6A163 AJ011932.1-201ENST00000621707 465 ntBASIC16.82■□□□□ 0.28
KRT39Q6A163 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.82■□□□□ 0.28
KRT39Q6A163 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
KRT39Q6A163 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
KRT39Q6A163 AC023024.2-201ENST00000623561 1993 ntBASIC16.82■□□□□ 0.28
KRT39Q6A163 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
KRT39Q6A163 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
KRT39Q6A163 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
KRT39Q6A163 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
KRT39Q6A163 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
KRT39Q6A163 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
KRT39Q6A163 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
KRT39Q6A163 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.81■□□□□ 0.28
KRT39Q6A163 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
KRT39Q6A163 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
KRT39Q6A163 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.81■□□□□ 0.28
KRT39Q6A163 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.81■□□□□ 0.28
KRT39Q6A163 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
KRT39Q6A163 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
KRT39Q6A163 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.81■□□□□ 0.28
KRT39Q6A163 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
KRT39Q6A163 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
KRT39Q6A163 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.81■□□□□ 0.28
KRT39Q6A163 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
KRT39Q6A163 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.81■□□□□ 0.28
KRT39Q6A163 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
KRT39Q6A163 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.81■□□□□ 0.28
KRT39Q6A163 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.81■□□□□ 0.28
KRT39Q6A163 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.81■□□□□ 0.28
KRT39Q6A163 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.81■□□□□ 0.28
KRT39Q6A163 RARRES2P5-201ENST00000564013 466 ntBASIC16.81■□□□□ 0.28
KRT39Q6A163 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
KRT39Q6A163 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.81■□□□□ 0.28
KRT39Q6A163 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.81■□□□□ 0.28
KRT39Q6A163 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
KRT39Q6A163 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.81■□□□□ 0.28
KRT39Q6A163 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
KRT39Q6A163 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
KRT39Q6A163 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
KRT39Q6A163 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
KRT39Q6A163 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.81■□□□□ 0.28
KRT39Q6A163 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
KRT39Q6A163 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.8■□□□□ 0.28
KRT39Q6A163 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 CLK3P2-201ENST00000427566 1453 ntBASIC16.8■□□□□ 0.28
KRT39Q6A163 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 CICP11-201ENST00000434745 2827 ntBASIC16.8■□□□□ 0.28
KRT39Q6A163 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.8■□□□□ 0.28
KRT39Q6A163 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.8■□□□□ 0.28
KRT39Q6A163 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.8■□□□□ 0.28
KRT39Q6A163 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.8■□□□□ 0.28
KRT39Q6A163 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.8■□□□□ 0.28
KRT39Q6A163 TPRX2P-201ENST00000535362 881 ntBASIC16.8■□□□□ 0.28
KRT39Q6A163 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.8■□□□□ 0.28
KRT39Q6A163 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.8■□□□□ 0.28
KRT39Q6A163 AC009118.2-201ENST00000613275 655 ntBASIC16.8■□□□□ 0.28
KRT39Q6A163 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.8■□□□□ 0.28
KRT39Q6A163 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms