Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 AC004466.1-201ENST00000599515 1080 ntBASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHROOM1Q2M3G4 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHROOM1Q2M3G4 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SHROOM1Q2M3G4 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SHROOM1Q2M3G4 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHROOM1Q2M3G4 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHROOM1Q2M3G4 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHROOM1Q2M3G4 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
SHROOM1Q2M3G4 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SHROOM1Q2M3G4 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.02■□□□□ 0.47
SHROOM1Q2M3G4 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 AL139094.1-201ENST00000405549 1188 ntBASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 AL591846.1-201ENST00000451736 433 ntBASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 PFN1P12-201ENST00000455938 534 ntBASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 AL096828.3-201ENST00000615354 462 ntBASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHROOM1Q2M3G4 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 MST1L-201ENST00000442552 2185 ntBASIC18■□□□□ 0.47
SHROOM1Q2M3G4 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 AC114812.1-204ENST00000449669 728 ntBASIC18■□□□□ 0.47
SHROOM1Q2M3G4 HOMER2P2-201ENST00000451621 847 ntBASIC18■□□□□ 0.47
SHROOM1Q2M3G4 Z93015.1-201ENST00000451718 390 ntBASIC18■□□□□ 0.47
SHROOM1Q2M3G4 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
SHROOM1Q2M3G4 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 AL157414.3-201ENST00000624276 1954 ntBASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms