Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.2■□□□□ 0.02
YBX1P67809 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.2■□□□□ 0.02
YBX1P67809 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.2■□□□□ 0.02
YBX1P67809 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.2■□□□□ 0.02
YBX1P67809 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.2■□□□□ 0.02
YBX1P67809 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
YBX1P67809 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC15.2■□□□□ 0.02
YBX1P67809 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
YBX1P67809 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.2■□□□□ 0.02
YBX1P67809 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.2■□□□□ 0.02
YBX1P67809 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
YBX1P67809 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
YBX1P67809 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.2■□□□□ 0.02
YBX1P67809 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
YBX1P67809 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.2■□□□□ 0.02
YBX1P67809 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
YBX1P67809 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.2■□□□□ 0.02
YBX1P67809 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
YBX1P67809 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
YBX1P67809 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
YBX1P67809 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
YBX1P67809 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
YBX1P67809 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
YBX1P67809 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
YBX1P67809 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.19■□□□□ 0.02
YBX1P67809 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.19■□□□□ 0.02
YBX1P67809 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
YBX1P67809 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
YBX1P67809 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.19■□□□□ 0.02
YBX1P67809 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.19■□□□□ 0.02
YBX1P67809 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.19■□□□□ 0.02
YBX1P67809 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.19■□□□□ 0.02
YBX1P67809 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.19■□□□□ 0.02
YBX1P67809 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC15.19■□□□□ 0.02
YBX1P67809 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC15.19■□□□□ 0.02
YBX1P67809 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15.19■□□□□ 0.02
YBX1P67809 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
YBX1P67809 CFL1-212ENST00000531413 636 ntTSL 3 BASIC15.19■□□□□ 0.02
YBX1P67809 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
YBX1P67809 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC15.19■□□□□ 0.02
YBX1P67809 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.19■□□□□ 0.02
YBX1P67809 LINC02560-201ENST00000596379 459 ntBASIC15.19■□□□□ 0.02
YBX1P67809 SRD5A3P1-201ENST00000603021 949 ntBASIC15.19■□□□□ 0.02
YBX1P67809 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.19■□□□□ 0.02
YBX1P67809 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.19■□□□□ 0.02
YBX1P67809 HFE2-206ENST00000634927 506 ntTSL 4 BASIC15.19■□□□□ 0.02
YBX1P67809 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.19■□□□□ 0.02
YBX1P67809 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
YBX1P67809 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
YBX1P67809 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
YBX1P67809 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.19■□□□□ 0.02
YBX1P67809 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 BTBD7P1-201ENST00000447253 1453 ntBASIC15.19■□□□□ 0.02
YBX1P67809 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.19■□□□□ 0.02
YBX1P67809 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
YBX1P67809 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
YBX1P67809 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
YBX1P67809 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
YBX1P67809 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.18■□□□□ 0.02
YBX1P67809 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.18■□□□□ 0.02
YBX1P67809 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.18■□□□□ 0.02
YBX1P67809 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
YBX1P67809 AC127383.1-201ENST00000444697 1800 ntBASIC15.18■□□□□ 0.02
YBX1P67809 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
YBX1P67809 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms