Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.74□□□□□ -0.05
RFX3P48380 IGHV3-42-201ENST00000520410 361 ntBASIC14.74□□□□□ -0.05
RFX3P48380 AL512356.2-201ENST00000546955 174 ntBASIC14.74□□□□□ -0.05
RFX3P48380 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
RFX3P48380 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 AC106028.4-201ENST00000614509 607 ntBASIC14.74□□□□□ -0.05
RFX3P48380 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
RFX3P48380 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.74□□□□□ -0.05
RFX3P48380 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.74□□□□□ -0.05
RFX3P48380 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
RFX3P48380 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.74□□□□□ -0.05
RFX3P48380 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.74□□□□□ -0.05
RFX3P48380 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.74□□□□□ -0.05
RFX3P48380 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.74□□□□□ -0.05
RFX3P48380 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
RFX3P48380 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
RFX3P48380 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.74□□□□□ -0.05
RFX3P48380 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
RFX3P48380 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 AC073347.1-201ENST00000421633 2643 ntBASIC14.73□□□□□ -0.05
RFX3P48380 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.73□□□□□ -0.05
RFX3P48380 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.73□□□□□ -0.05
RFX3P48380 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC14.73□□□□□ -0.05
RFX3P48380 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.73□□□□□ -0.05
RFX3P48380 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.73□□□□□ -0.05
RFX3P48380 AC107890.1-201ENST00000422478 521 ntBASIC14.73□□□□□ -0.05
RFX3P48380 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.73□□□□□ -0.05
RFX3P48380 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.73□□□□□ -0.05
RFX3P48380 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.73□□□□□ -0.05
RFX3P48380 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.73□□□□□ -0.05
RFX3P48380 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.73□□□□□ -0.05
RFX3P48380 AL079307.3-201ENST00000556114 283 ntBASIC14.73□□□□□ -0.05
RFX3P48380 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 AL133215.2-201ENST00000609242 977 ntBASIC14.73□□□□□ -0.05
RFX3P48380 LINC02228-204ENST00000642115 2962 ntBASIC14.73□□□□□ -0.05
RFX3P48380 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
RFX3P48380 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.73□□□□□ -0.05
RFX3P48380 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
RFX3P48380 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RFX3P48380 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
RFX3P48380 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.72□□□□□ -0.05
RFX3P48380 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.72□□□□□ -0.05
RFX3P48380 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
RFX3P48380 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.72□□□□□ -0.05
RFX3P48380 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.72□□□□□ -0.05
RFX3P48380 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.72□□□□□ -0.05
RFX3P48380 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
RFX3P48380 PHKG1P2-201ENST00000457537 863 ntBASIC14.72□□□□□ -0.05
RFX3P48380 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.72□□□□□ -0.05
RFX3P48380 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14.72□□□□□ -0.05
RFX3P48380 AC069120.2-201ENST00000524091 540 ntBASIC14.72□□□□□ -0.05
RFX3P48380 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.72□□□□□ -0.05
RFX3P48380 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.72□□□□□ -0.05
RFX3P48380 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.72□□□□□ -0.05
RFX3P48380 SPDYE12P-201ENST00000618416 771 ntBASIC14.72□□□□□ -0.05
RFX3P48380 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.72□□□□□ -0.05
RFX3P48380 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.72□□□□□ -0.05
RFX3P48380 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RFX3P48380 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.72□□□□□ -0.05
RFX3P48380 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
RFX3P48380 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms