Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RXRBP28702 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.88■□□□□ 0.77
RXRBP28702 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC19.88■□□□□ 0.77
RXRBP28702 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RXRBP28702 LINC01165-201ENST00000445190 1623 ntBASIC19.87■□□□□ 0.77
RXRBP28702 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
RXRBP28702 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
RXRBP28702 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RXRBP28702 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC19.87■□□□□ 0.77
RXRBP28702 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC19.87■□□□□ 0.77
RXRBP28702 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.87■□□□□ 0.77
RXRBP28702 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
RXRBP28702 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RXRBP28702 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RXRBP28702 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
RXRBP28702 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC19.87■□□□□ 0.77
RXRBP28702 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC19.87■□□□□ 0.77
RXRBP28702 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RXRBP28702 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC19.87■□□□□ 0.77
RXRBP28702 NEU3-207ENST00000534628 746 ntTSL 2 BASIC19.87■□□□□ 0.77
RXRBP28702 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC19.87■□□□□ 0.77
RXRBP28702 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC19.87■□□□□ 0.77
RXRBP28702 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC19.87■□□□□ 0.77
RXRBP28702 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
RXRBP28702 AC010632.2-201ENST00000588369 1224 ntBASIC19.87■□□□□ 0.77
RXRBP28702 AP005264.6-204ENST00000588436 719 ntBASIC19.87■□□□□ 0.77
RXRBP28702 NAV1-210ENST00000593583 726 ntBASIC19.87■□□□□ 0.77
RXRBP28702 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC19.87■□□□□ 0.77
RXRBP28702 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RXRBP28702 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RXRBP28702 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.87■□□□□ 0.77
RXRBP28702 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RXRBP28702 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RXRBP28702 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RXRBP28702 AL672207.1-201ENST00000328462 1570 ntBASIC19.87■□□□□ 0.77
RXRBP28702 AC021305.1-201ENST00000520656 1514 ntBASIC19.86■□□□□ 0.77
RXRBP28702 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
RXRBP28702 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
RXRBP28702 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
RXRBP28702 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
RXRBP28702 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC19.86■□□□□ 0.77
RXRBP28702 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
RXRBP28702 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
RXRBP28702 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC19.86■□□□□ 0.77
RXRBP28702 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.86■□□□□ 0.77
RXRBP28702 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RXRBP28702 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
RXRBP28702 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC19.86■□□□□ 0.77
RXRBP28702 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC19.86■□□□□ 0.77
RXRBP28702 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC19.86■□□□□ 0.77
RXRBP28702 AC063952.3-201ENST00000467756 308 ntBASIC19.86■□□□□ 0.77
RXRBP28702 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC19.86■□□□□ 0.77
RXRBP28702 AC114947.1-202ENST00000514136 344 ntBASIC19.86■□□□□ 0.77
RXRBP28702 RNA5SP417-201ENST00000516459 108 ntBASIC19.86■□□□□ 0.77
RXRBP28702 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC19.86■□□□□ 0.77
RXRBP28702 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC19.86■□□□□ 0.77
RXRBP28702 MIR6125-201ENST00000618986 96 ntBASIC19.86■□□□□ 0.77
RXRBP28702 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
RXRBP28702 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.86■□□□□ 0.77
RXRBP28702 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RXRBP28702 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
RXRBP28702 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
RXRBP28702 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC19.86■□□□□ 0.77
RXRBP28702 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RXRBP28702 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RXRBP28702 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC19.85■□□□□ 0.77
RXRBP28702 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RXRBP28702 AC009093.2-202ENST00000620513 2079 ntBASIC19.85■□□□□ 0.77
RXRBP28702 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
RXRBP28702 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
RXRBP28702 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
RXRBP28702 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RXRBP28702 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RXRBP28702 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RXRBP28702 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
RXRBP28702 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
RXRBP28702 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC19.85■□□□□ 0.77
RXRBP28702 RNLS-203ENST00000437752 525 ntTSL 2 BASIC19.85■□□□□ 0.77
RXRBP28702 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
RXRBP28702 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC19.85■□□□□ 0.77
RXRBP28702 RN7SL846P-201ENST00000467429 292 ntBASIC19.85■□□□□ 0.77
RXRBP28702 AC026470.1-201ENST00000478038 846 ntBASIC19.85■□□□□ 0.77
RXRBP28702 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC19.85■□□□□ 0.77
RXRBP28702 BCL2L12P1-201ENST00000508390 733 ntBASIC19.85■□□□□ 0.77
RXRBP28702 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC19.85■□□□□ 0.77
RXRBP28702 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC19.85■□□□□ 0.77
RXRBP28702 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC19.85■□□□□ 0.77
RXRBP28702 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
RXRBP28702 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC19.85■□□□□ 0.77
RXRBP28702 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC19.85■□□□□ 0.77
RXRBP28702 CR392039.1-201ENST00000623217 204 ntBASIC19.85■□□□□ 0.77
RXRBP28702 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
RXRBP28702 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC19.85■□□□□ 0.77
RXRBP28702 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RXRBP28702 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
RXRBP28702 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
RXRBP28702 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
RXRBP28702 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
RXRBP28702 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.85■□□□□ 0.77
RXRBP28702 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms