Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC15.26■□□□□ 0.033e-11■□□□□ 10.2
YBX3P16989 TMEM14C-202ENST00000466421 472 ntTSL 220.97■□□□□ 0.956e-14■□□□□ 10.2
YBX3P16989 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.955e-9■□□□□ 10.2
YBX3P16989 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.825e-9■□□□□ 10.2
YBX3P16989 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC20.17■□□□□ 0.825e-9■□□□□ 10.2
YBX3P16989 MRFAP1-204ENST00000512914 1982 nt16.48■□□□□ 0.235e-9■□□□□ 10.2
YBX3P16989 UXT-204ENST00000460840 476 ntTSL 25.4□□□□□ -1.545e-10■□□□□ 10.2
YBX3P16989 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC8.62□□□□□ -1.031e-6■□□□□ 10.2
YBX3P16989 CEP57-206ENST00000537093 404 ntTSL 56.26□□□□□ -1.415e-9■□□□□ 10.2
YBX3P16989 SFXN4-205ENST00000462913 278 ntTSL 58.29□□□□□ -1.082e-6■□□□□ 10.2
YBX3P16989 SERPINF1-204ENST00000571149 431 ntTSL 322.87■■□□□ 1.253e-7■□□□□ 10.2
YBX3P16989 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.3■□□□□ 0.046e-7■□□□□ 10.2
YBX3P16989 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -06e-7■□□□□ 10.2
YBX3P16989 CLASP2-209ENST00000468888 6978 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.586e-7■□□□□ 10.2
YBX3P16989 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC8.22□□□□□ -1.096e-7■□□□□ 10.2
YBX3P16989 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.51□□□□□ -1.376e-7■□□□□ 10.2
YBX3P16989 PROS1-202ENST00000394236 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.373e-7■□□□□ 10.2
YBX3P16989 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.52□□□□□ -1.693e-7■□□□□ 10.2
YBX3P16989 PABPC4-208ENST00000461578 193 ntTSL 519.57■□□□□ 0.724e-31■□□□□ 10.2
YBX3P16989 PABPC4-212ENST00000477556 413 ntTSL 317.99■□□□□ 0.474e-31■□□□□ 10.2
YBX3P16989 PABPC4-214ENST00000483770 476 ntTSL 212.38□□□□□ -0.434e-31■□□□□ 10.2
YBX3P16989 FNDC3A-201ENST00000378383 2037 ntTSL 2 BASIC9.87□□□□□ -0.837e-17■□□□□ 10.2
YBX3P16989 FNDC3A-206ENST00000541916 6328 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.917e-17■□□□□ 10.2
YBX3P16989 FNDC3A-204ENST00000492622 6286 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.997e-17■□□□□ 10.2
YBX3P16989 FNDC3A-203ENST00000484074 6082 ntTSL 1 (best)4.04□□□□□ -1.767e-17■□□□□ 10.2
YBX3P16989 RNY3P2-201ENST00000362918 102 ntBASIC3.56□□□□□ -1.847e-17■□□□□ 10.2
YBX3P16989 ZNF146-203ENST00000586094 565 ntTSL 210.16□□□□□ -0.782e-7■□□□□ 10.2
YBX3P16989 ZNF146-205ENST00000591063 533 ntTSL 24.6□□□□□ -1.672e-7■□□□□ 10.2
YBX3P16989 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC41.66■■■■■ 4.267e-16■□□□□ 10.2
YBX3P16989 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC29.05■■■□□ 2.247e-16■□□□□ 10.2
YBX3P16989 AES-206ENST00000586742 1666 ntTSL 323.79■■□□□ 1.47e-16■□□□□ 10.2
YBX3P16989 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.54■□□□□ 0.727e-16■□□□□ 10.2
YBX3P16989 AES-211ENST00000592330 275 ntTSL 54.72□□□□□ -1.657e-16■□□□□ 10.2
YBX3P16989 ANXA1-208ENST00000495713 905 ntTSL 26.33□□□□□ -1.41e-8■□□□□ 10.2
YBX3P16989 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.436e-10■□□□□ 10.2
YBX3P16989 CEBPG-202ENST00000585933 3845 ntAPPRIS P1 TSL 2 BASIC8.74□□□□□ -1.016e-10■□□□□ 10.2
YBX3P16989 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC21.73■■□□□ 1.079e-8■□□□□ 10.2
YBX3P16989 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC19.43■□□□□ 0.79e-8■□□□□ 10.2
YBX3P16989 GSTK1-201ENST00000358406 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.229e-8■□□□□ 10.2
YBX3P16989 GSTK1-205ENST00000443571 850 ntTSL 2 BASIC15.01□□□□□ -0.019e-8■□□□□ 10.2
YBX3P16989 GSTK1-204ENST00000442394 2219 ntTSL 512.18□□□□□ -0.469e-8■□□□□ 10.2
YBX3P16989 GSTK1-206ENST00000473649 2692 ntTSL 210.86□□□□□ -0.679e-8■□□□□ 10.2
YBX3P16989 TMEM205-214ENST00000591677 628 ntTSL 221.46■■□□□ 1.033e-9■□□□□ 10.2
YBX3P16989 DEK-206ENST00000512145 791 ntTSL 59.6□□□□□ -0.872e-19■□□□□ 10.2
YBX3P16989 DEK-208ENST00000515770 730 ntTSL 58.32□□□□□ -1.082e-19■□□□□ 10.2
YBX3P16989 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.211e-11■□□□□ 10.2
YBX3P16989 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.11e-11■□□□□ 10.2
YBX3P16989 TMBIM6-227ENST00000552699 2964 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.261e-11■□□□□ 10.2
YBX3P16989 TMBIM6-201ENST00000267115 2836 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.71e-11■□□□□ 10.2
YBX3P16989 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC7.97□□□□□ -1.131e-11■□□□□ 10.2
YBX3P16989 TMBIM6-209ENST00000547798 2494 ntAPPRIS ALT2 TSL 2 BASIC7.81□□□□□ -1.161e-11■□□□□ 10.2
YBX3P16989 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC17.81■□□□□ 0.443e-14■□□□□ 10.2
YBX3P16989 GPAT4-206ENST00000520258 870 ntTSL 227.79■■■□□ 2.047e-10■□□□□ 10.2
YBX3P16989 TRAM1-204ENST00000521049 872 ntTSL 523.03■■□□□ 1.287e-10■□□□□ 10.2
YBX3P16989 TRAM1-202ENST00000518678 535 ntTSL 422.57■■□□□ 1.27e-10■□□□□ 10.2
YBX3P16989 TRAM1-203ENST00000520700 542 ntTSL 521.7■■□□□ 1.067e-10■□□□□ 10.2
YBX3P16989 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.19■□□□□ 0.57e-10■□□□□ 10.2
YBX3P16989 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.417e-10■□□□□ 10.2
YBX3P16989 SART3-208ENST00000547528 1935 ntTSL 1 (best)15.37■□□□□ 0.057e-10■□□□□ 10.2
YBX3P16989 SART3-206ENST00000546815 2318 ntTSL 513.27□□□□□ -0.297e-10■□□□□ 10.2
YBX3P16989 ERGIC1-209ENST00000520642 539 ntTSL 421.13■□□□□ 0.972e-6■□□□□ 10.2
YBX3P16989 ERGIC1-207ENST00000520326 647 ntTSL 519.84■□□□□ 0.772e-6■□□□□ 10.2
YBX3P16989 SLC2A1-205ENST00000475162 598 ntTSL 519.52■□□□□ 0.725e-14■□□□□ 10.2
YBX3P16989 CHD4-203ENST00000535717 660 ntTSL 215.24■□□□□ 0.032e-10■□□□□ 10.2
YBX3P16989 ARPC3-201ENST00000228825 1014 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.365e-8■□□□□ 10.2
YBX3P16989 ARPC3-202ENST00000426440 349 ntTSL 37.81□□□□□ -1.165e-8■□□□□ 10.2
YBX3P16989 DAP3-219ENST00000479151 725 ntTSL 56.66□□□□□ -1.343e-11■□□□□ 10.2
YBX3P16989 IQGAP1-214ENST00000560738 3602 ntTSL 5 BASIC9.8□□□□□ -0.847e-7■□□□□ 10.2
YBX3P16989 IQGAP1-218ENST00000633485 5863 ntTSL 58.51□□□□□ -1.057e-7■□□□□ 10.2
YBX3P16989 IQGAP1-201ENST00000268182 7233 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.057e-7■□□□□ 10.2
YBX3P16989 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC13.74□□□□□ -0.213e-7■□□□□ 10.2
YBX3P16989 YPEL3-208ENST00000566401 522 ntTSL 326.39■■□□□ 1.822e-6■□□□□ 10.2
YBX3P16989 YPEL3-210ENST00000568674 371 ntTSL 225.57■■□□□ 1.682e-6■□□□□ 10.2
YBX3P16989 YPEL3-205ENST00000565110 575 ntTSL 525.5■■□□□ 1.672e-6■□□□□ 10.2
YBX3P16989 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.81■□□□□ 0.762e-6■□□□□ 10.2
YBX3P16989 YPEL3-211ENST00000568681 1739 ntTSL 219.46■□□□□ 0.712e-6■□□□□ 10.2
YBX3P16989 AC011462.1-201ENST00000604424 567 ntTSL 414.38□□□□□ -0.119e-7■□□□□ 10.2
YBX3P16989 CTDSP1-213ENST00000496785 460 ntTSL 524.7■■□□□ 1.541e-6■□□□□ 10.2
YBX3P16989 CTDSP1-207ENST00000473420 922 ntTSL 323.84■■□□□ 1.411e-6■□□□□ 10.2
YBX3P16989 CTDSP1-203ENST00000431127 586 ntTSL 322.53■■□□□ 1.21e-6■□□□□ 10.2
YBX3P16989 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC22.13■■□□□ 1.131e-6■□□□□ 10.2
YBX3P16989 CTDSP1-215ENST00000498160 877 ntTSL 521.52■■□□□ 1.041e-6■□□□□ 10.2
YBX3P16989 CTDSP1-209ENST00000488627 1118 ntTSL 320.91■□□□□ 0.941e-6■□□□□ 10.2
YBX3P16989 CTDSP1-214ENST00000497677 998 ntTSL 220.91■□□□□ 0.941e-6■□□□□ 10.2
YBX3P16989 CTDSP1-202ENST00000428361 842 ntTSL 520.78■□□□□ 0.921e-6■□□□□ 10.2
YBX3P16989 CTDSP1-205ENST00000452977 818 ntTSL 520.78■□□□□ 0.921e-6■□□□□ 10.2
YBX3P16989 CTDSP1-210ENST00000491064 786 ntTSL 319.42■□□□□ 0.71e-6■□□□□ 10.2
YBX3P16989 CTDSP1-208ENST00000482272 984 ntTSL 218.13■□□□□ 0.491e-6■□□□□ 10.2
YBX3P16989 CTDSP1-212ENST00000494067 362 ntTSL 318.11■□□□□ 0.491e-6■□□□□ 10.2
YBX3P16989 CTDSP1-206ENST00000464255 926 ntTSL 517.62■□□□□ 0.411e-6■□□□□ 10.2
YBX3P16989 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.121e-6■□□□□ 10.2
YBX3P16989 TCF12-215ENST00000560190 1183 ntTSL 1 (best)26.25■■□□□ 1.791e-6■□□□□ 10.2
YBX3P16989 TCF12-212ENST00000559609 2252 ntTSL 213.32□□□□□ -0.281e-6■□□□□ 10.2
YBX3P16989 PLXNB2-210ENST00000479818 1916 ntTSL 1 (best)20.21■□□□□ 0.833e-7■□□□□ 10.2
YBX3P16989 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.92e-9■□□□□ 10.2
YBX3P16989 THAP7-206ENST00000476667 1671 ntTSL 523.96■■□□□ 1.432e-9■□□□□ 10.2
YBX3P16989 THAP7-208ENST00000498406 1957 ntTSL 223.15■■□□□ 1.32e-9■□□□□ 10.2
YBX3P16989 THAP7-204ENST00000471073 1809 ntTSL 222.55■■□□□ 1.22e-9■□□□□ 10.2
YBX3P16989 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.122e-9■□□□□ 10.2
YBX3P16989 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC33.09■■■□□ 2.897e-8■□□□□ 10.2
Retrieved 100 of 29,075 protein–RNA pairs in 171.4 ms