Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXD4P09016 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.2□□□□□ -0.14
HOXD4P09016 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.2□□□□□ -0.14
HOXD4P09016 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 NAA38-206ENST00000576384 424 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXD4P09016 AC015936.2-201ENST00000593177 259 ntBASIC14.2□□□□□ -0.14
HOXD4P09016 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 MIR8072-201ENST00000614241 80 ntBASIC14.2□□□□□ -0.14
HOXD4P09016 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.2□□□□□ -0.14
HOXD4P09016 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
HOXD4P09016 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.2□□□□□ -0.14
HOXD4P09016 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.2□□□□□ -0.14
HOXD4P09016 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 AC139749.1-202ENST00000617529 3139 ntBASIC14.2□□□□□ -0.14
HOXD4P09016 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HOXD4P09016 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
HOXD4P09016 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXD4P09016 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD4P09016 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD4P09016 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD4P09016 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD4P09016 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HOXD4P09016 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXD4P09016 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.19□□□□□ -0.14
HOXD4P09016 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
HOXD4P09016 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.19□□□□□ -0.14
HOXD4P09016 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD4P09016 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.19□□□□□ -0.14
HOXD4P09016 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
HOXD4P09016 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.19□□□□□ -0.14
HOXD4P09016 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD4P09016 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD4P09016 TOMM22P5-201ENST00000416399 439 ntBASIC14.19□□□□□ -0.14
HOXD4P09016 RPL13P2-201ENST00000440687 659 ntBASIC14.19□□□□□ -0.14
HOXD4P09016 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXD4P09016 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD4P09016 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXD4P09016 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD4P09016 PHKG1P2-201ENST00000457537 863 ntBASIC14.19□□□□□ -0.14
HOXD4P09016 RN7SL837P-201ENST00000463010 287 ntBASIC14.19□□□□□ -0.14
HOXD4P09016 RPL13AP25-201ENST00000484130 612 ntBASIC14.19□□□□□ -0.14
HOXD4P09016 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXD4P09016 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXD4P09016 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.19□□□□□ -0.14
HOXD4P09016 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD4P09016 AC092552.1-201ENST00000547243 906 ntBASIC14.19□□□□□ -0.14
HOXD4P09016 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.19□□□□□ -0.14
HOXD4P09016 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.19□□□□□ -0.14
HOXD4P09016 AL033527.5-201ENST00000641382 801 ntBASIC14.19□□□□□ -0.14
HOXD4P09016 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.19□□□□□ -0.14
HOXD4P09016 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
HOXD4P09016 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HOXD4P09016 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
HOXD4P09016 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD4P09016 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
HOXD4P09016 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD4P09016 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
HOXD4P09016 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
HOXD4P09016 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD4P09016 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXD4P09016 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD4P09016 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD4P09016 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HOXD4P09016 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
HOXD4P09016 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.19□□□□□ -0.14
HOXD4P09016 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD4P09016 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXD4P09016 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
HOXD4P09016 AC092364.2-201ENST00000596710 2692 ntBASIC14.18□□□□□ -0.14
HOXD4P09016 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.18□□□□□ -0.14
HOXD4P09016 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXD4P09016 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
HOXD4P09016 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.18□□□□□ -0.14
HOXD4P09016 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXD4P09016 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.18□□□□□ -0.14
HOXD4P09016 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD4P09016 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.18□□□□□ -0.14
HOXD4P09016 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXD4P09016 AZGP1P1-201ENST00000411909 902 ntBASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms