Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM49D1C9J1S8 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM49D1C9J1S8 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM49D1C9J1S8 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM49D1C9J1S8 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 AP3S2-216ENST00000617003 1561 ntBASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 RPL5P21-201ENST00000404620 815 ntBASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 MED15P5-201ENST00000423150 992 ntBASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 KRT18P3-201ENST00000451602 1288 ntBASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 AC079140.1-201ENST00000508039 487 ntBASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 KRT8P48-201ENST00000515599 1220 ntBASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 IGHV3-62-201ENST00000520057 340 ntBASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 AC140113.2-201ENST00000604370 208 ntBASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM49D1C9J1S8 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 AC084364.1-201ENST00000551967 1556 ntBASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 ZNF259P1-201ENST00000407656 1365 ntBASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 AC026120.1-201ENST00000611536 926 ntBASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 AC140479.7-201ENST00000636301 2332 ntBASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 ACE3P-201ENST00000423435 1973 ntBASIC15.66■□□□□ 0.1
TRIM49D1C9J1S8 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms