Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL20A1Q9P218 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.48■□□□□ 0.39
COL20A1Q9P218 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 TUBB1P2-201ENST00000422712 1306 ntBASIC17.47■□□□□ 0.39
COL20A1Q9P218 TUBB1P1-201ENST00000503144 1300 ntBASIC17.47■□□□□ 0.39
COL20A1Q9P218 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
COL20A1Q9P218 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC17.47■□□□□ 0.39
COL20A1Q9P218 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.47■□□□□ 0.39
COL20A1Q9P218 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.47■□□□□ 0.39
COL20A1Q9P218 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
COL20A1Q9P218 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
COL20A1Q9P218 AC104457.1-201ENST00000401024 814 ntBASIC17.47■□□□□ 0.39
COL20A1Q9P218 EIF3FP3-201ENST00000434851 1086 ntBASIC17.47■□□□□ 0.39
COL20A1Q9P218 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC17.47■□□□□ 0.39
COL20A1Q9P218 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC17.47■□□□□ 0.39
COL20A1Q9P218 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.47■□□□□ 0.39
COL20A1Q9P218 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17.47■□□□□ 0.39
COL20A1Q9P218 INO80C-210ENST00000590757 595 ntTSL 2 BASIC17.47■□□□□ 0.39
COL20A1Q9P218 ECM1P1-201ENST00000604092 1279 ntBASIC17.47■□□□□ 0.39
COL20A1Q9P218 AC132938.4-201ENST00000623835 848 ntBASIC17.47■□□□□ 0.39
COL20A1Q9P218 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC17.47■□□□□ 0.39
COL20A1Q9P218 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.47■□□□□ 0.39
COL20A1Q9P218 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.47■□□□□ 0.39
COL20A1Q9P218 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.47■□□□□ 0.39
COL20A1Q9P218 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL20A1Q9P218 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
COL20A1Q9P218 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 NUS1P3-201ENST00000423502 862 ntBASIC17.46■□□□□ 0.39
COL20A1Q9P218 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 FAM21FP-201ENST00000426241 1131 ntBASIC17.46■□□□□ 0.39
COL20A1Q9P218 AL355994.2-201ENST00000447882 704 ntBASIC17.46■□□□□ 0.39
COL20A1Q9P218 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 PACS1-203ENST00000524815 628 ntTSL 4 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.46■□□□□ 0.39
COL20A1Q9P218 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
COL20A1Q9P218 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL20A1Q9P218 KRT8P14-201ENST00000414254 1442 ntBASIC17.46■□□□□ 0.39
COL20A1Q9P218 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
COL20A1Q9P218 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms