Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 EIF3FP3-201ENST00000434851 1086 ntBASIC15.42■□□□□ 0.06
TTC28Q96AY4 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 LINC01144-201ENST00000626198 1710 ntBASIC15.42■□□□□ 0.06
TTC28Q96AY4 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TTC28Q96AY4 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
TTC28Q96AY4 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 CD276-203ENST00000537340 2439 ntTSL 2 BASIC15.41■□□□□ 0.06
TTC28Q96AY4 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.41■□□□□ 0.06
TTC28Q96AY4 CASP2-203ENST00000392925 616 ntTSL 3 BASIC15.41■□□□□ 0.06
TTC28Q96AY4 RBPMSLP-201ENST00000433427 502 ntBASIC15.41■□□□□ 0.06
TTC28Q96AY4 E2F3P2-201ENST00000447755 1422 ntBASIC15.41■□□□□ 0.06
TTC28Q96AY4 MESTP3-201ENST00000503460 968 ntBASIC15.41■□□□□ 0.06
TTC28Q96AY4 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC15.41■□□□□ 0.06
TTC28Q96AY4 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC15.41■□□□□ 0.06
TTC28Q96AY4 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC15.41■□□□□ 0.06
TTC28Q96AY4 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 CLUHP2-201ENST00000426660 1303 ntBASIC15.41■□□□□ 0.06
TTC28Q96AY4 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
TTC28Q96AY4 AC008536.3-201ENST00000623282 1599 ntBASIC15.41■□□□□ 0.06
TTC28Q96AY4 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.41■□□□□ 0.06
TTC28Q96AY4 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 Z98259.2-201ENST00000641583 609 ntBASIC15.41■□□□□ 0.06
TTC28Q96AY4 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
TTC28Q96AY4 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.41■□□□□ 0.06
TTC28Q96AY4 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC15.41■□□□□ 0.06
TTC28Q96AY4 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TTC28Q96AY4 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC15.4■□□□□ 0.06
TTC28Q96AY4 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
TTC28Q96AY4 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
TTC28Q96AY4 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC15.4■□□□□ 0.06
TTC28Q96AY4 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
TTC28Q96AY4 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.4■□□□□ 0.06
TTC28Q96AY4 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
TTC28Q96AY4 AL592424.1-201ENST00000563624 1536 ntBASIC15.4■□□□□ 0.06
TTC28Q96AY4 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.4■□□□□ 0.06
TTC28Q96AY4 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC15.4■□□□□ 0.06
TTC28Q96AY4 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 RAN-210ENST00000541630 1475 ntTSL 2 BASIC15.4■□□□□ 0.06
TTC28Q96AY4 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 OLA1P2-201ENST00000395519 1264 ntBASIC15.4■□□□□ 0.06
TTC28Q96AY4 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC15.4■□□□□ 0.06
TTC28Q96AY4 ACTG1P19-201ENST00000418987 1116 ntBASIC15.4■□□□□ 0.06
TTC28Q96AY4 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC15.4■□□□□ 0.06
TTC28Q96AY4 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TTC28Q96AY4 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC15.4■□□□□ 0.06
TTC28Q96AY4 MIEF1-215ENST00000637854 213 ntBASIC15.4■□□□□ 0.06
TTC28Q96AY4 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
TTC28Q96AY4 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 FRMPD2B-201ENST00000431305 1347 ntBASIC15.4■□□□□ 0.06
TTC28Q96AY4 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TTC28Q96AY4 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC15.39■□□□□ 0.06
TTC28Q96AY4 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TTC28Q96AY4 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TTC28Q96AY4 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TTC28Q96AY4 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms