Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.31■□□□□ 0.2
COL4A4P53420 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 AC084364.1-201ENST00000551967 1556 ntBASIC16.31■□□□□ 0.2
COL4A4P53420 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
COL4A4P53420 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
COL4A4P53420 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC16.31■□□□□ 0.2
COL4A4P53420 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
COL4A4P53420 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.31■□□□□ 0.2
COL4A4P53420 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.31■□□□□ 0.2
COL4A4P53420 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
COL4A4P53420 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
COL4A4P53420 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 AL136309.1-201ENST00000403917 691 ntBASIC16.3■□□□□ 0.2
COL4A4P53420 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.3■□□□□ 0.2
COL4A4P53420 PFN2-202ENST00000423691 911 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A4P53420 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC16.3■□□□□ 0.2
COL4A4P53420 RNMTL1P1-201ENST00000454103 560 ntBASIC16.3■□□□□ 0.2
COL4A4P53420 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A4P53420 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC16.3■□□□□ 0.2
COL4A4P53420 PTK2-225ENST00000520892 571 ntTSL 4 BASIC16.3■□□□□ 0.2
COL4A4P53420 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC16.3■□□□□ 0.2
COL4A4P53420 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A4P53420 AL161670.2-201ENST00000557650 1227 ntBASIC16.3■□□□□ 0.2
COL4A4P53420 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC16.3■□□□□ 0.2
COL4A4P53420 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
COL4A4P53420 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC16.3■□□□□ 0.2
COL4A4P53420 AC020658.6-201ENST00000623564 1870 ntBASIC16.3■□□□□ 0.2
COL4A4P53420 HLA-C-210ENST00000640219 976 ntBASIC16.3■□□□□ 0.2
COL4A4P53420 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
COL4A4P53420 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.3■□□□□ 0.2
COL4A4P53420 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A4P53420 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A4P53420 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL4A4P53420 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.3■□□□□ 0.2
COL4A4P53420 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
COL4A4P53420 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.3■□□□□ 0.2
COL4A4P53420 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 AL139094.1-201ENST00000405549 1188 ntBASIC16.3■□□□□ 0.2
COL4A4P53420 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC16.3■□□□□ 0.2
COL4A4P53420 AC005740.2-201ENST00000511085 419 ntBASIC16.3■□□□□ 0.2
COL4A4P53420 IGLV3-15-201ENST00000518356 244 ntBASIC16.3■□□□□ 0.2
COL4A4P53420 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC16.3■□□□□ 0.2
COL4A4P53420 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC16.3■□□□□ 0.2
COL4A4P53420 AC011491.1-203ENST00000637688 543 ntBASIC16.3■□□□□ 0.2
COL4A4P53420 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL4A4P53420 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A4P53420 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A4P53420 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.29■□□□□ 0.2
COL4A4P53420 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
COL4A4P53420 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC16.29■□□□□ 0.2
COL4A4P53420 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.29■□□□□ 0.2
COL4A4P53420 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
COL4A4P53420 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.29■□□□□ 0.2
COL4A4P53420 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COL4A4P53420 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COL4A4P53420 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
COL4A4P53420 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC16.29■□□□□ 0.2
COL4A4P53420 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16.29■□□□□ 0.2
COL4A4P53420 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC16.29■□□□□ 0.2
COL4A4P53420 Z97180.1-201ENST00000445173 988 ntBASIC16.29■□□□□ 0.2
COL4A4P53420 NOC2LP1-201ENST00000450578 752 ntBASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms