Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 HLA-V-201ENST00000429037 534 ntBASIC17.06■□□□□ 0.32
CLCN3P51790 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.06■□□□□ 0.32
CLCN3P51790 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.06■□□□□ 0.32
CLCN3P51790 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC17.06■□□□□ 0.32
CLCN3P51790 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC17.06■□□□□ 0.32
CLCN3P51790 KRT90P-201ENST00000549264 1064 ntBASIC17.06■□□□□ 0.32
CLCN3P51790 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.06■□□□□ 0.32
CLCN3P51790 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.06■□□□□ 0.32
CLCN3P51790 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC17.06■□□□□ 0.32
CLCN3P51790 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CLCN3P51790 SERF2-217ENST00000630046 862 ntTSL 5 BASIC17.06■□□□□ 0.32
CLCN3P51790 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC17.06■□□□□ 0.32
CLCN3P51790 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.06■□□□□ 0.32
CLCN3P51790 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLCN3P51790 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CLCN3P51790 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLCN3P51790 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
CLCN3P51790 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CLCN3P51790 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CLCN3P51790 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLCN3P51790 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CLCN3P51790 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLCN3P51790 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CLCN3P51790 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CLCN3P51790 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
CLCN3P51790 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.05■□□□□ 0.32
CLCN3P51790 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CLCN3P51790 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.05■□□□□ 0.32
CLCN3P51790 HYMAI-201ENST00000635591 3347 ntBASIC17.05■□□□□ 0.32
CLCN3P51790 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CLCN3P51790 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.05■□□□□ 0.32
CLCN3P51790 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.05■□□□□ 0.32
CLCN3P51790 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
CLCN3P51790 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 RNU1-114P-201ENST00000365297 166 ntBASIC17.05■□□□□ 0.32
CLCN3P51790 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
CLCN3P51790 PGGT1BP2-201ENST00000398621 1028 ntBASIC17.05■□□□□ 0.32
CLCN3P51790 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CLCN3P51790 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC17.05■□□□□ 0.32
CLCN3P51790 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC17.05■□□□□ 0.32
CLCN3P51790 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC17.05■□□□□ 0.32
CLCN3P51790 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC17.05■□□□□ 0.32
CLCN3P51790 KRT18P25-201ENST00000508931 1278 ntBASIC17.05■□□□□ 0.32
CLCN3P51790 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.05■□□□□ 0.32
CLCN3P51790 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.05■□□□□ 0.32
CLCN3P51790 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC17.05■□□□□ 0.32
CLCN3P51790 AP000812.2-201ENST00000538934 718 ntBASIC17.05■□□□□ 0.32
CLCN3P51790 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC17.05■□□□□ 0.32
CLCN3P51790 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC17.05■□□□□ 0.32
CLCN3P51790 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.05■□□□□ 0.32
CLCN3P51790 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 AC092850.2-201ENST00000623821 2697 ntBASIC17.05■□□□□ 0.32
CLCN3P51790 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CLCN3P51790 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 REXO1L6P-201ENST00000603433 1515 ntBASIC17.05■□□□□ 0.32
CLCN3P51790 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
CLCN3P51790 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
CLCN3P51790 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLCN3P51790 AL365203.3-201ENST00000609742 2057 ntBASIC17.05■□□□□ 0.32
CLCN3P51790 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLCN3P51790 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
CLCN3P51790 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CLCN3P51790 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLCN3P51790 KRT8P35-201ENST00000483942 1338 ntBASIC17.04■□□□□ 0.32
CLCN3P51790 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CLCN3P51790 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLCN3P51790 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CLCN3P51790 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
CLCN3P51790 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLCN3P51790 GZMB-202ENST00000382540 816 ntTSL 5 BASIC17.04■□□□□ 0.32
CLCN3P51790 CSF2RBP1-201ENST00000447905 391 ntBASIC17.04■□□□□ 0.32
CLCN3P51790 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.04■□□□□ 0.32
CLCN3P51790 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLCN3P51790 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.04■□□□□ 0.32
CLCN3P51790 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.04■□□□□ 0.32
CLCN3P51790 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC17.04■□□□□ 0.32
CLCN3P51790 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CLCN3P51790 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLCN3P51790 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLCN3P51790 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17.04■□□□□ 0.32
CLCN3P51790 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.04■□□□□ 0.32
CLCN3P51790 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLCN3P51790 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms