Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.76□□□□□ -0.05
RFX3P48380 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.76□□□□□ -0.05
RFX3P48380 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.76□□□□□ -0.05
RFX3P48380 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.76□□□□□ -0.05
RFX3P48380 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.76□□□□□ -0.05
RFX3P48380 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.76□□□□□ -0.05
RFX3P48380 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.76□□□□□ -0.05
RFX3P48380 AL450472.2-201ENST00000603663 1156 ntBASIC14.76□□□□□ -0.05
RFX3P48380 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
RFX3P48380 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.76□□□□□ -0.05
RFX3P48380 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.76□□□□□ -0.05
RFX3P48380 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.76□□□□□ -0.05
RFX3P48380 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
RFX3P48380 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
RFX3P48380 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
RFX3P48380 CETN4P-206ENST00000642099 2168 ntBASIC14.75□□□□□ -0.05
RFX3P48380 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
RFX3P48380 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.75□□□□□ -0.05
RFX3P48380 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.75□□□□□ -0.05
RFX3P48380 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
RFX3P48380 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
RFX3P48380 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
RFX3P48380 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.75□□□□□ -0.05
RFX3P48380 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
RFX3P48380 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.75□□□□□ -0.05
RFX3P48380 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.75□□□□□ -0.05
RFX3P48380 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
RFX3P48380 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.75□□□□□ -0.05
RFX3P48380 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.75□□□□□ -0.05
RFX3P48380 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.75□□□□□ -0.05
RFX3P48380 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.75□□□□□ -0.05
RFX3P48380 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.75□□□□□ -0.05
RFX3P48380 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.75□□□□□ -0.05
RFX3P48380 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC14.75□□□□□ -0.05
RFX3P48380 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.75□□□□□ -0.05
RFX3P48380 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.75□□□□□ -0.05
RFX3P48380 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 ST20-AS1-201ENST00000560255 4223 ntBASIC14.75□□□□□ -0.05
RFX3P48380 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
RFX3P48380 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.75□□□□□ -0.05
RFX3P48380 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.75□□□□□ -0.05
RFX3P48380 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RFX3P48380 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.75□□□□□ -0.05
RFX3P48380 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.74□□□□□ -0.05
RFX3P48380 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.74□□□□□ -0.05
RFX3P48380 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
RFX3P48380 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
RFX3P48380 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
RFX3P48380 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
RFX3P48380 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.74□□□□□ -0.05
RFX3P48380 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
RFX3P48380 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.74□□□□□ -0.05
RFX3P48380 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
RFX3P48380 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 AZGP1P1-201ENST00000411909 902 ntBASIC14.74□□□□□ -0.05
RFX3P48380 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RFX3P48380 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.74□□□□□ -0.05
RFX3P48380 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.74□□□□□ -0.05
RFX3P48380 KLF2P3-201ENST00000451977 1087 ntBASIC14.74□□□□□ -0.05
RFX3P48380 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.74□□□□□ -0.05
RFX3P48380 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.74□□□□□ -0.05
RFX3P48380 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms