Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTPN9P43378 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
PTPN9P43378 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.19■□□□□ 0.18
PTPN9P43378 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
PTPN9P43378 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
PTPN9P43378 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
PTPN9P43378 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
PTPN9P43378 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
PTPN9P43378 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
PTPN9P43378 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.19■□□□□ 0.18
PTPN9P43378 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
PTPN9P43378 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 MROH4P-201ENST00000431302 1578 ntBASIC16.19■□□□□ 0.18
PTPN9P43378 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.19■□□□□ 0.18
PTPN9P43378 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.19■□□□□ 0.18
PTPN9P43378 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.19■□□□□ 0.18
PTPN9P43378 GNAQP1-201ENST00000444815 1067 ntBASIC16.19■□□□□ 0.18
PTPN9P43378 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.19■□□□□ 0.18
PTPN9P43378 TSPY16P-201ENST00000449843 468 ntBASIC16.19■□□□□ 0.18
PTPN9P43378 SERBP1P5-201ENST00000510079 1181 ntBASIC16.19■□□□□ 0.18
PTPN9P43378 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.19■□□□□ 0.18
PTPN9P43378 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.19■□□□□ 0.18
PTPN9P43378 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.19■□□□□ 0.18
PTPN9P43378 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.19■□□□□ 0.18
PTPN9P43378 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.19■□□□□ 0.18
PTPN9P43378 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 AC011467.4-201ENST00000594891 528 ntBASIC16.19■□□□□ 0.18
PTPN9P43378 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.19■□□□□ 0.18
PTPN9P43378 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.19■□□□□ 0.18
PTPN9P43378 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.19■□□□□ 0.18
PTPN9P43378 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
PTPN9P43378 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.19■□□□□ 0.18
PTPN9P43378 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTPN9P43378 CICP11-201ENST00000434745 2827 ntBASIC16.18■□□□□ 0.18
PTPN9P43378 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
PTPN9P43378 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
PTPN9P43378 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
PTPN9P43378 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
PTPN9P43378 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
PTPN9P43378 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 SLC7A15P-201ENST00000424028 1363 ntBASIC16.18■□□□□ 0.18
PTPN9P43378 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
PTPN9P43378 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.18■□□□□ 0.18
PTPN9P43378 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.18■□□□□ 0.18
PTPN9P43378 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.18■□□□□ 0.18
PTPN9P43378 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.18■□□□□ 0.18
PTPN9P43378 RN7SL399P-201ENST00000471648 279 ntBASIC16.18■□□□□ 0.18
PTPN9P43378 FAM86LP-201ENST00000478302 853 ntBASIC16.18■□□□□ 0.18
PTPN9P43378 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.18■□□□□ 0.18
PTPN9P43378 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.18■□□□□ 0.18
PTPN9P43378 GAPDHP40-201ENST00000505218 1006 ntBASIC16.18■□□□□ 0.18
PTPN9P43378 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.18■□□□□ 0.18
PTPN9P43378 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.18■□□□□ 0.18
PTPN9P43378 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.18■□□□□ 0.18
PTPN9P43378 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.18■□□□□ 0.18
PTPN9P43378 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
PTPN9P43378 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
PTPN9P43378 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.18■□□□□ 0.18
PTPN9P43378 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.18■□□□□ 0.18
PTPN9P43378 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.18■□□□□ 0.18
PTPN9P43378 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 AC006058.4-201ENST00000624016 1670 ntBASIC16.18■□□□□ 0.18
PTPN9P43378 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms