Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
RFC3P40938 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RFC3P40938 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.34□□□□□ -0.11
RFC3P40938 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RFC3P40938 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RFC3P40938 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
RFC3P40938 DBET-201ENST00000630918 3363 ntBASIC14.34□□□□□ -0.11
RFC3P40938 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.34□□□□□ -0.11
RFC3P40938 MIR648-201ENST00000385046 94 ntBASIC14.34□□□□□ -0.11
RFC3P40938 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
RFC3P40938 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.34□□□□□ -0.11
RFC3P40938 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.34□□□□□ -0.11
RFC3P40938 FAM86LP-201ENST00000478302 853 ntBASIC14.34□□□□□ -0.11
RFC3P40938 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.34□□□□□ -0.11
RFC3P40938 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.34□□□□□ -0.11
RFC3P40938 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.34□□□□□ -0.11
RFC3P40938 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.34□□□□□ -0.11
RFC3P40938 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.34□□□□□ -0.11
RFC3P40938 IFT20-216ENST00000588477 774 ntTSL 5 BASIC14.34□□□□□ -0.11
RFC3P40938 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.34□□□□□ -0.11
RFC3P40938 AL391069.4-201ENST00000609583 481 ntBASIC14.34□□□□□ -0.11
RFC3P40938 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.34□□□□□ -0.11
RFC3P40938 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RFC3P40938 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.34□□□□□ -0.11
RFC3P40938 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.34□□□□□ -0.11
RFC3P40938 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RFC3P40938 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.34□□□□□ -0.11
RFC3P40938 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.34□□□□□ -0.11
RFC3P40938 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
RFC3P40938 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
RFC3P40938 AC006449.5-201ENST00000610658 2098 ntBASIC14.34□□□□□ -0.11
RFC3P40938 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFC3P40938 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RFC3P40938 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
RFC3P40938 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RFC3P40938 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.33□□□□□ -0.11
RFC3P40938 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
RFC3P40938 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
RFC3P40938 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.33□□□□□ -0.11
RFC3P40938 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
RFC3P40938 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
RFC3P40938 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFC3P40938 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
RFC3P40938 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
RFC3P40938 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFC3P40938 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.33□□□□□ -0.12
RFC3P40938 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.33□□□□□ -0.12
RFC3P40938 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
RFC3P40938 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
RFC3P40938 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
RFC3P40938 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFC3P40938 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.33□□□□□ -0.12
RFC3P40938 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RFC3P40938 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.33□□□□□ -0.12
RFC3P40938 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.33□□□□□ -0.12
RFC3P40938 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.33□□□□□ -0.12
RFC3P40938 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.33□□□□□ -0.12
RFC3P40938 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.33□□□□□ -0.12
RFC3P40938 RAB43P1-201ENST00000561790 589 ntBASIC14.33□□□□□ -0.12
RFC3P40938 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.33□□□□□ -0.12
RFC3P40938 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
RFC3P40938 AC010319.3-201ENST00000597028 470 ntBASIC14.33□□□□□ -0.12
RFC3P40938 AL359881.2-201ENST00000602973 570 ntBASIC14.33□□□□□ -0.12
RFC3P40938 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.33□□□□□ -0.12
RFC3P40938 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RFC3P40938 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFC3P40938 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
RFC3P40938 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RFC3P40938 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
RFC3P40938 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.33□□□□□ -0.12
RFC3P40938 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RFC3P40938 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFC3P40938 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFC3P40938 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.33□□□□□ -0.12
RFC3P40938 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFC3P40938 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
RFC3P40938 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFC3P40938 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms