Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN4AP35499 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN4AP35499 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SCN4AP35499 HIST2H2BA-201ENST00000412169 381 ntBASIC17.93■□□□□ 0.46
SCN4AP35499 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC17.93■□□□□ 0.46
SCN4AP35499 AC092638.2-201ENST00000441105 947 ntBASIC17.93■□□□□ 0.46
SCN4AP35499 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC17.93■□□□□ 0.46
SCN4AP35499 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC17.93■□□□□ 0.46
SCN4AP35499 AC084781.1-201ENST00000613737 656 ntBASIC17.93■□□□□ 0.46
SCN4AP35499 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
SCN4AP35499 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
SCN4AP35499 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SCN4AP35499 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN4AP35499 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN4AP35499 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN4AP35499 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN4AP35499 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SCN4AP35499 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SCN4AP35499 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC17.93■□□□□ 0.46
SCN4AP35499 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC17.93■□□□□ 0.46
SCN4AP35499 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC17.93■□□□□ 0.46
SCN4AP35499 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC17.93■□□□□ 0.46
SCN4AP35499 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC17.93■□□□□ 0.46
SCN4AP35499 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SCN4AP35499 MIR3188-201ENST00000583494 85 ntBASIC17.93■□□□□ 0.46
SCN4AP35499 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SCN4AP35499 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC17.93■□□□□ 0.46
SCN4AP35499 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN4AP35499 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN4AP35499 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SCN4AP35499 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.93■□□□□ 0.46
SCN4AP35499 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
SCN4AP35499 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
SCN4AP35499 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN4AP35499 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN4AP35499 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.92■□□□□ 0.46
SCN4AP35499 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SCN4AP35499 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN4AP35499 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN4AP35499 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.92■□□□□ 0.46
SCN4AP35499 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
SCN4AP35499 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.92■□□□□ 0.46
SCN4AP35499 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
SCN4AP35499 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN4AP35499 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.92■□□□□ 0.46
SCN4AP35499 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN4AP35499 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN4AP35499 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN4AP35499 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN4AP35499 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC17.92■□□□□ 0.46
SCN4AP35499 AL157407.1-201ENST00000435784 904 ntBASIC17.92■□□□□ 0.46
SCN4AP35499 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC17.92■□□□□ 0.46
SCN4AP35499 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC17.92■□□□□ 0.46
SCN4AP35499 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC17.92■□□□□ 0.46
SCN4AP35499 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC17.92■□□□□ 0.46
SCN4AP35499 SCARNA21-201ENST00000517026 139 ntBASIC17.92■□□□□ 0.46
SCN4AP35499 AC011247.3-201ENST00000603297 438 ntBASIC17.92■□□□□ 0.46
SCN4AP35499 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.92■□□□□ 0.46
SCN4AP35499 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC17.92■□□□□ 0.46
SCN4AP35499 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
SCN4AP35499 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SCN4AP35499 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SCN4AP35499 LINC01165-201ENST00000445190 1623 ntBASIC17.92■□□□□ 0.46
SCN4AP35499 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.92■□□□□ 0.46
SCN4AP35499 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SCN4AP35499 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SCN4AP35499 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN4AP35499 STK26-204ENST00000481105 1835 ntTSL 2 BASIC17.92■□□□□ 0.46
SCN4AP35499 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN4AP35499 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.91■□□□□ 0.46
SCN4AP35499 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN4AP35499 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SCN4AP35499 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN4AP35499 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN4AP35499 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.91■□□□□ 0.46
SCN4AP35499 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC17.91■□□□□ 0.46
SCN4AP35499 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN4AP35499 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC17.91■□□□□ 0.46
SCN4AP35499 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SCN4AP35499 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SCN4AP35499 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
SCN4AP35499 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC17.91■□□□□ 0.46
SCN4AP35499 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN4AP35499 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN4AP35499 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN4AP35499 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN4AP35499 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.91■□□□□ 0.46
SCN4AP35499 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN4AP35499 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN4AP35499 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN4AP35499 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN4AP35499 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN4AP35499 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SCN4AP35499 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN4AP35499 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SCN4AP35499 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN4AP35499 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN4AP35499 AC004837.1-201ENST00000446267 564 ntBASIC17.91■□□□□ 0.46
SCN4AP35499 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SCN4AP35499 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms