Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.58■□□□□ 0.09
MSH3P20585 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.58■□□□□ 0.08
MSH3P20585 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
MSH3P20585 TMBIM7P-203ENST00000641617 1718 ntBASIC15.58■□□□□ 0.08
MSH3P20585 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.58■□□□□ 0.08
MSH3P20585 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 AC015922.1-201ENST00000421102 1152 ntBASIC15.58■□□□□ 0.08
MSH3P20585 RPL13P2-201ENST00000440687 659 ntBASIC15.58■□□□□ 0.08
MSH3P20585 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
MSH3P20585 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.58■□□□□ 0.08
MSH3P20585 SRD5A3P1-201ENST00000603021 949 ntBASIC15.58■□□□□ 0.08
MSH3P20585 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.58■□□□□ 0.08
MSH3P20585 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.58■□□□□ 0.08
MSH3P20585 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.58■□□□□ 0.08
MSH3P20585 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.58■□□□□ 0.08
MSH3P20585 DBET-201ENST00000630918 3363 ntBASIC15.58■□□□□ 0.08
MSH3P20585 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
MSH3P20585 AC092127.1-201ENST00000567093 3455 ntBASIC15.58■□□□□ 0.08
MSH3P20585 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
MSH3P20585 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
MSH3P20585 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.58■□□□□ 0.08
MSH3P20585 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.58■□□□□ 0.08
MSH3P20585 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.58■□□□□ 0.08
MSH3P20585 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.58■□□□□ 0.08
MSH3P20585 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSH3P20585 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.57■□□□□ 0.08
MSH3P20585 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.57■□□□□ 0.08
MSH3P20585 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC15.57■□□□□ 0.08
MSH3P20585 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC15.57■□□□□ 0.08
MSH3P20585 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.57■□□□□ 0.08
MSH3P20585 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
MSH3P20585 DOC2GP-202ENST00000514950 1163 ntBASIC15.57■□□□□ 0.08
MSH3P20585 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
MSH3P20585 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC15.57■□□□□ 0.08
MSH3P20585 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.57■□□□□ 0.08
MSH3P20585 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.57■□□□□ 0.08
MSH3P20585 MIR4745-201ENST00000577608 62 ntBASIC15.57■□□□□ 0.08
MSH3P20585 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.57■□□□□ 0.08
MSH3P20585 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC15.57■□□□□ 0.08
MSH3P20585 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
MSH3P20585 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.57■□□□□ 0.08
MSH3P20585 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.57■□□□□ 0.08
MSH3P20585 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.57■□□□□ 0.08
MSH3P20585 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 AC144831.1-201ENST00000573312 2656 ntBASIC15.57■□□□□ 0.08
MSH3P20585 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
MSH3P20585 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.57■□□□□ 0.08
MSH3P20585 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSH3P20585 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.57■□□□□ 0.08
MSH3P20585 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms