Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
APOEP02649 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
APOEP02649 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
APOEP02649 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
APOEP02649 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.41■□□□□ 0.22
APOEP02649 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.41■□□□□ 0.22
APOEP02649 PPT1-215ENST00000641471 2368 ntBASIC16.41■□□□□ 0.22
APOEP02649 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
APOEP02649 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
APOEP02649 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.4■□□□□ 0.22
APOEP02649 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
APOEP02649 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.4■□□□□ 0.22
APOEP02649 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 SPDYE19P-201ENST00000338590 713 ntBASIC16.4■□□□□ 0.22
APOEP02649 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
APOEP02649 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.4■□□□□ 0.22
APOEP02649 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
APOEP02649 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.4■□□□□ 0.22
APOEP02649 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.4■□□□□ 0.22
APOEP02649 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.4■□□□□ 0.22
APOEP02649 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.4■□□□□ 0.22
APOEP02649 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.4■□□□□ 0.22
APOEP02649 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
APOEP02649 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
APOEP02649 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.4■□□□□ 0.22
APOEP02649 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.4■□□□□ 0.22
APOEP02649 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16.4■□□□□ 0.22
APOEP02649 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16.4■□□□□ 0.22
APOEP02649 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.4■□□□□ 0.22
APOEP02649 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
APOEP02649 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.39■□□□□ 0.22
APOEP02649 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
APOEP02649 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
APOEP02649 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
APOEP02649 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
APOEP02649 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.21
APOEP02649 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
APOEP02649 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
APOEP02649 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
APOEP02649 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 AC074338.1-201ENST00000416825 156 ntBASIC16.39■□□□□ 0.21
APOEP02649 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.39■□□□□ 0.21
APOEP02649 AC015922.1-201ENST00000421102 1152 ntBASIC16.39■□□□□ 0.21
APOEP02649 RPL13P2-201ENST00000440687 659 ntBASIC16.39■□□□□ 0.21
APOEP02649 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 AC093004.1-201ENST00000508850 424 ntBASIC16.39■□□□□ 0.21
APOEP02649 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.39■□□□□ 0.21
APOEP02649 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.39■□□□□ 0.21
APOEP02649 TPRX2P-201ENST00000535362 881 ntBASIC16.39■□□□□ 0.21
APOEP02649 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.39■□□□□ 0.21
APOEP02649 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
APOEP02649 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
APOEP02649 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.39■□□□□ 0.21
APOEP02649 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.39■□□□□ 0.21
APOEP02649 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
APOEP02649 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.38■□□□□ 0.21
APOEP02649 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
APOEP02649 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
APOEP02649 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.38■□□□□ 0.21
APOEP02649 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms