Protein–RNA interactions for Protein: O76090

BEST1, Bestrophin-1, humanhuman

Predictions only

Length 585 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST1O76090 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.3■□□□□ 0.2
BEST1O76090 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
BEST1O76090 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
BEST1O76090 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
BEST1O76090 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
BEST1O76090 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
BEST1O76090 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
BEST1O76090 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
BEST1O76090 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
BEST1O76090 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 ACTG1P3-201ENST00000431775 1114 ntBASIC16.3■□□□□ 0.2
BEST1O76090 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.3■□□□□ 0.2
BEST1O76090 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 ENPP7P5-201ENST00000541031 1031 ntBASIC16.3■□□□□ 0.2
BEST1O76090 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.3■□□□□ 0.2
BEST1O76090 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.3■□□□□ 0.2
BEST1O76090 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.3■□□□□ 0.2
BEST1O76090 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC16.3■□□□□ 0.2
BEST1O76090 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 C18orf15-201ENST00000623680 2534 ntBASIC16.3■□□□□ 0.2
BEST1O76090 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
BEST1O76090 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.3■□□□□ 0.2
BEST1O76090 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
BEST1O76090 PPT1-215ENST00000641471 2368 ntBASIC16.3■□□□□ 0.2
BEST1O76090 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
BEST1O76090 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.3■□□□□ 0.2
BEST1O76090 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.29■□□□□ 0.2
BEST1O76090 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
BEST1O76090 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
BEST1O76090 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
BEST1O76090 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.29■□□□□ 0.2
BEST1O76090 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
BEST1O76090 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
BEST1O76090 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
BEST1O76090 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
BEST1O76090 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.29■□□□□ 0.2
BEST1O76090 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.29■□□□□ 0.2
BEST1O76090 AC093433.1-201ENST00000458048 571 ntBASIC16.29■□□□□ 0.2
BEST1O76090 USP32P1-208ENST00000506594 1164 ntBASIC16.29■□□□□ 0.2
BEST1O76090 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC16.29■□□□□ 0.2
BEST1O76090 AP001582.1-201ENST00000525856 295 ntBASIC16.29■□□□□ 0.2
BEST1O76090 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
BEST1O76090 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.29■□□□□ 0.2
BEST1O76090 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.29■□□□□ 0.2
BEST1O76090 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC16.29■□□□□ 0.2
BEST1O76090 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
BEST1O76090 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BEST1O76090 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BEST1O76090 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
BEST1O76090 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BEST1O76090 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BEST1O76090 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.28■□□□□ 0.2
BEST1O76090 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.28■□□□□ 0.2
BEST1O76090 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.28■□□□□ 0.2
BEST1O76090 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
BEST1O76090 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BEST1O76090 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BEST1O76090 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BEST1O76090 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
BEST1O76090 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.28■□□□□ 0.2
BEST1O76090 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms