Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RPL5P21-201ENST00000404620 815 ntBASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 AC254562.1-201ENST00000417586 456 ntBASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 RPP21-221ENST00000428040 594 ntTSL 2 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 MTND6P24-201ENST00000440466 518 ntBASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 AL512356.2-201ENST00000546955 174 ntBASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 MIR4453-201ENST00000584019 89 ntBASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 AC023824.1-201ENST00000562945 2975 ntBASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.15□□□□□ -0.14
HIF3AQ9Y2N7 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 GOLGA6L17P-202ENST00000614358 1398 ntBASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 TARDBPP1-201ENST00000442013 1203 ntBASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 AP006288.1-201ENST00000446065 395 ntBASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 AL079307.3-201ENST00000556114 283 ntBASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 AC091951.1-201ENST00000512854 2465 ntBASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HIF3AQ9Y2N7 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 OR2I1P-209ENST00000641730 5365 ntBASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIF3AQ9Y2N7 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms